Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G16
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0692 + 5179778-5181847                                           31   1.2  
03_02_0950 + 12661008-12662312,12662403-12662576                       30   2.1  
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362...    30   2.8  
01_06_0581 - 30386018-30386440                                         29   4.8  
11_01_0433 - 3323372-3324616,3324708-3324905                           29   6.4  
01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140...    28   8.4  
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    28   8.4  
01_01_1226 - 9901183-9901256,9901436-9901619                           28   8.4  

>02_01_0692 + 5179778-5181847
          Length = 689

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -3

Query: 626 CLSRRRAPGHTRXRPGAVFXRGAPASALRGCLAARHWTTTSCGFS 492
           CL RRR  G    RPG V      +SA  G LA+   TTT+   S
Sbjct: 311 CLRRRRGVGEESVRPGKVVG-DVSSSAEYGALASGKQTTTATSMS 354


>03_02_0950 + 12661008-12662312,12662403-12662576
          Length = 492

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 501 AASGGPVAGGKAAAESRSRSTTXEHXAXPXARVPG-GASPGKTSGNIATRNXHLSXXSLG 677
           AA+GG   GG A     +++T+  H   P +   G G+ P    G+I  R+   +  S G
Sbjct: 53  AAAGGVGVGGSAWTHQPAKTTSWTHQPSPASAAAGAGSGPTSMVGDIFGRSWSSAAPSSG 112


>09_04_0265 +
           16233596-16233752,16234206-16234720,16236199-16236229,
           16236559-16237001
          Length = 381

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/46 (43%), Positives = 21/46 (45%)
 Frame = +3

Query: 495 ETAASGGPVAGGKAAAESRSRSTTXEHXAXPXARVPGGASPGKTSG 632
           E +  GGPVAG  AAA       T E      A VPGG   GK  G
Sbjct: 238 EASGRGGPVAGDVAAA-------TREKGRASAAGVPGGGVKGKHGG 276


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>11_01_0433 - 3323372-3324616,3324708-3324905
          Length = 480

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 453 RLDTDICHN-IEMNAETAASGGPVAGGKAAAESRSR 557
           +++T +  N +EM  E AA+ G   GG AAA  R R
Sbjct: 5   KVETIVAGNYVEMEREGAATAGEGVGGAAAASGRRR 40


>01_06_0835 -
           32312264-32312884,32313529-32313642,32313739-32314029,
           32314135-32314443,32315194-32315931
          Length = 690

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 EMNAETAASGGPVAGGKAAAESRSRSTT 566
           E+ A  AA G P AGGKA     +R  T
Sbjct: 30  EVEAGAAAPGSPAAGGKAGRGKNARQIT 57


>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 477  NIEMNAETAASGGPVAGGKAAA-ESRSRSTTXEHXAXPXARVPGGASPGKTSGNI 638
            N+E   E AA+ G V G  AAA ++ S +        P A   G   P  T G +
Sbjct: 1216 NVEATTEPAAAPGNVEGTAAAATDATSNADATSGAPAPAADSNGADPPAVTPGQV 1270


>01_01_1226 - 9901183-9901256,9901436-9901619
          Length = 85

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 523 RAARQPRRAEAGAPRXNTAPGRQRVCPGARLRER 624
           +A      A A AP   +A GR+R CPG    ER
Sbjct: 6   KAGGDDAAAAAAAPLLVSAAGRRRRCPGCLTEER 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,185
Number of Sequences: 37544
Number of extensions: 275035
Number of successful extensions: 1153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)