Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G16
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.68 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 540 AESRSRSTTXEHXAXPXARVPGGASPGKTSGNIATR 647
           +ES + S   E    P  + P   S  +T+GN+ATR
Sbjct: 315 SESETSSDEEEADTRPLKKEPITQSNKRTAGNLATR 350


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 532 RQPRRAEAGAPRXNTAPGRQRV 597
           R+ R+ E G P  NT  G QR+
Sbjct: 22  RKKRKFELGRPAANTKLGPQRI 43


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 533 LAARHWTTTSCGFSVH 486
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,528
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)