BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G16 (868 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 4.0 At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 28 9.3 >At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017 Length = 1340 Score = 29.1 bits (62), Expect = 4.0 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 516 PVAGGKAAAESRSRSTTXEHXAXPXARVPGGASPGKTS 629 PV GKA +S EH A P VP S G +S Sbjct: 761 PVNDGKATGMKGEKSDVPEHVAIPETTVPKEESTGTSS 798 >At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene for histone protein GB:X15142 GI:3204 [Physarum polycephalum] Length = 614 Score = 27.9 bits (59), Expect = 9.3 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +3 Query: 492 AETAASGGPVAGGKAAAESRSRSTTXEHXAXPXARVPGGASPGKTSGNIA 641 A++ + G +GG A A+S ++ A GGA+ TSG A Sbjct: 226 ADSGDAAGADSGGAAGADSGGAASADSGGAAAGETASGGAAAADTSGGSA 275 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,791,758 Number of Sequences: 28952 Number of extensions: 157195 Number of successful extensions: 441 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 440 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 2028915200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -