Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G16
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   4.0  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    28   9.3  

>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 516 PVAGGKAAAESRSRSTTXEHXAXPXARVPGGASPGKTS 629
           PV  GKA      +S   EH A P   VP   S G +S
Sbjct: 761 PVNDGKATGMKGEKSDVPEHVAIPETTVPKEESTGTSS 798


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 492 AETAASGGPVAGGKAAAESRSRSTTXEHXAXPXARVPGGASPGKTSGNIA 641
           A++  + G  +GG A A+S   ++     A       GGA+   TSG  A
Sbjct: 226 ADSGDAAGADSGGAAGADSGGAASADSGGAAAGETASGGAAAADTSGGSA 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,758
Number of Sequences: 28952
Number of extensions: 157195
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)