Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G13
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 111 1e-25
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 107 1e-24
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.25
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.43
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.7
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 9.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 111 bits (267), Expect = 1e-25
Identities = 53/78 (67%), Positives = 60/78 (76%)
Frame = -3
Query: 591 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 412
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Query: 411 PRDQRWDVVVDLFFYRXP 358
R WDV+ DL+FYR P
Sbjct: 192 SRSAPWDVMPDLYFYRDP 209
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -2
Query: 703 HTGXTPIAGRFTPGAFTNQIQAAFREXRLLIVLDP 599
HTG T IAGRFTPG FTN I +RE RL++V DP
Sbjct: 95 HTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 107 bits (258), Expect = 1e-24
Identities = 63/139 (45%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -3
Query: 771 NPXXXXVIXSRPFGQXAVXKXPX-TPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWTLQ 595
NP VI SRP+G AV K T + + ++ + + + +
Sbjct: 73 NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI-IVTDPR 131
Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGN 191
Query: 414 LPRDQRWDVVVDLFFYRXP 358
+ R W+V+ DL+FYR P
Sbjct: 192 ISRTTAWEVMPDLYFYRDP 210
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -2
Query: 703 HTGXTPIAGRFTPGAFTNQIQAAFREXRLLIVLDP 599
HTG T IAGRFTPG FTN I +RE RL+IV DP
Sbjct: 96 HTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 573 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439
EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 353 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 422 VVCFPVTSAGMLWLICSSTVXPEESEKD 339
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 541 SNHRNVDI*SFSNGLMVLLQGPIQSRDXVHGM 636
S + N+DI SF + M + G ++ R +HG+
Sbjct: 433 SQYNNLDINSFFSHYMSNIAGKVKFRSLLHGV 464
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 657 KAPGVKRPAIGVXPVXPXTS 716
+AP V +P++GV PV P ++
Sbjct: 1196 EAPPVPKPSVGVPPVPPPST 1215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,782
Number of Sequences: 5004
Number of extensions: 48848
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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