BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G13 (785 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 114 9e-26 03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 114 9e-26 12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2 06_03_0543 + 21967787-21970261 29 5.5 12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3 05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 28 9.7 >07_03_1272 - 25360180-25360286,25360454-25360658,25360748-25360945, 25361034-25361296,25361865-25362009 Length = 305 Score = 114 bits (274), Expect = 9e-26 Identities = 62/139 (44%), Positives = 79/139 (56%), Gaps = 1/139 (0%) Frame = -3 Query: 771 NPXXXXVIXSRPFGQXAVXKXPXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWT-LQ 595 NP V +RP+GQ AV K + H T S + L T + Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG-RHTPGTFTNQLQTSFSEPRLLILTDPR 132 Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415 DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192 Query: 414 LPRDQRWDVVVDLFFYRXP 358 + +WDV+VDLFFYR P Sbjct: 193 ILPGHKWDVMVDLFFYRDP 211 >03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701, 4319791-4320053,4320453-4320597 Length = 305 Score = 114 bits (274), Expect = 9e-26 Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 1/139 (0%) Frame = -3 Query: 771 NPXXXXVIXSRPFGQXAVXKXPXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWT-LQ 595 NP V +RP+GQ AV K + H T S + L T + Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG-RHTPGTFTNQLQTSFSEPRLLILTDPR 132 Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415 DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGT 192 Query: 414 LPRDQRWDVVVDLFFYRXP 358 + +WDV+VDLFFYR P Sbjct: 193 ILPGHKWDVMVDLFFYRDP 211 >12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 Length = 781 Score = 29.5 bits (63), Expect = 3.2 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -3 Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130 T C C P + VCPG+R V+ N Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301 Score = 27.9 bits (59), Expect = 9.7 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -3 Query: 210 TRCSSCFWSTPCSRRMVCPGTR 145 TRC C P R CPG+R Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102 >06_03_0543 + 21967787-21970261 Length = 824 Score = 28.7 bits (61), Expect = 5.5 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 462 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 373 L W++L RE +LRGV P + ++++ + F Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501 >12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 Length = 427 Score = 28.3 bits (60), Expect = 7.3 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -3 Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130 T+C C P VCPG+R V N Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119 >05_03_0609 - 16161801-16162848,16163525-16163682,16163806-16163835, 16164242-16164323,16164599-16164672 Length = 463 Score = 27.9 bits (59), Expect = 9.7 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 445 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQSNHR-NVDI*SFSNGLMVLLQGPI 609 + PP Q RVG GV H WG C +S R N I S + +++ + GP+ Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVESWDRFNFVIQSLIHEVLIEM-GPL 71 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,066,143 Number of Sequences: 37544 Number of extensions: 341444 Number of successful extensions: 917 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 913 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2115411120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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