Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G13
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 133 2e-31
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.028
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 33 0.26
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.4
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 7.5
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 9.9
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 9.9
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 133 bits (321), Expect = 2e-31
Identities = 70/142 (49%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Frame = -3
Query: 771 NPXXXXVIXSRPFGQXAVXKXPX----TPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYW 604
NP VI +RP+GQ A+ K TP+ + + + + V
Sbjct: 70 NPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVC---- 125
Query: 603 TLQQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 424
+ DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+
Sbjct: 126 DPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRM 185
Query: 423 RGVLPRDQRWDVVVDLFFYRXP 358
RG + R W+++ DL+FYR P
Sbjct: 186 RGSISRALPWEIMPDLYFYRDP 207
Score = 68.5 bits (160), Expect = 6e-12
Identities = 31/35 (88%), Positives = 31/35 (88%)
Frame = -2
Query: 703 HTGXTPIAGRFTPGAFTNQIQAAFREXRLLIVLDP 599
HTG TPIAGRFTPG FTNQIQAAFRE RLLIV DP
Sbjct: 93 HTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDP 127
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 377 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 544
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 545 ITGMLTY 565
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 708 PXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWTLQQDHQPITEASYVNIPVIALC 535
P PV R S V + + +L +N + W + Q++ P+ Y +IP +ALC
Sbjct: 40 PGPPVERFF---SGHVPIFNQGRLRGLNFYQ-ILWEISQEYSPVILLWYYHIPFVALC 93
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 365 R*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 535
R N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 536 HKAITG 553
+TG
Sbjct: 63 EFTLTG 68
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 474 HSIGLMWWLLAREVLRLRGVLP 409
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 198 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 97
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 367 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 513
V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 528 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 397
+SPL + I +PCNT +S+ W+LLA + ++ VL D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 398 RWSRGSTPRSLSTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 538
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,796,780
Number of Sequences: 59808
Number of extensions: 404414
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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