Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G13
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   123   2e-28
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   118   6e-27
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   102   3e-22
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.6  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  123 bits (296), Expect = 2e-28
 Identities = 65/139 (46%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
 Frame = -3

Query: 771 NPXXXXVIXSRPFGQXAVXKXPXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWT-LQ 595
           NP    V  +RP+GQ AV K         +    H     T     S +    L  T  +
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGANAIAG-RHTPGTFTNQMQTSFSEPRLLILTDPR 132

Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415
            DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG 
Sbjct: 133 TDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192

Query: 414 LPRDQRWDVVVDLFFYRXP 358
           +   Q+WDV+VDLFFYR P
Sbjct: 193 IAAGQKWDVMVDLFFYREP 211


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  118 bits (283), Expect = 6e-27
 Identities = 64/139 (46%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
 Frame = -3

Query: 771 NPXXXXVIXSRPFGQXAVXKXPXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWT-LQ 595
           NP    V  +RP+GQ AV K         +    H     T     S +    L  T  +
Sbjct: 75  NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAG-RHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415
            DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG 
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 193

Query: 414 LPRDQRWDVVVDLFFYRXP 358
           +   Q+WDV+VDLFFYR P
Sbjct: 194 ILAAQKWDVMVDLFFYREP 212


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  102 bits (244), Expect = 3e-22
 Identities = 57/132 (43%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = -3

Query: 771 NPXXXXVIXSRPFGQXAVXKXPXTPVXRLLRDVSHQVLLLTRSKLHSVNXVS*LYWT-LQ 595
           NP    V  +RP+GQ AV K         +    H     T     S +    L  T  +
Sbjct: 75  NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAG-RHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 594 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 415
            DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG 
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 193

Query: 414 LPRDQRWDVVVD 379
           +   Q+WDV+V+
Sbjct: 194 ILAAQKWDVMVN 205


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 343 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 230
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 528 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 391
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,901
Number of Sequences: 28952
Number of extensions: 268338
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)