Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G12
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen...    32   2.8  
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.                 32   2.8  
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha...    32   2.8  
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen...    32   2.8  
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ...    32   2.8  

>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
            protein.
          Length = 1464

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 504  PDEPRGSDGYPAKTGLNNLKGF*SVCGPRERT 599
            P  P GS G P K GLN L G     GPR RT
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 1171


>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
          Length = 1040

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 504 PDEPRGSDGYPAKTGLNNLKGF*SVCGPRERT 599
           P  P GS G P K GLN L G     GPR RT
Sbjct: 716 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 747


>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
            protein.
          Length = 1464

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 504  PDEPRGSDGYPAKTGLNNLKGF*SVCGPRERT 599
            P  P GS G P K GLN L G     GPR RT
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 1171


>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
            protein.
          Length = 1461

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 504  PDEPRGSDGYPAKTGLNNLKGF*SVCGPRERT 599
            P  P GS G P K GLN L G     GPR RT
Sbjct: 1137 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 1168


>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
            precursor variant protein.
          Length = 1467

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 504  PDEPRGSDGYPAKTGLNNLKGF*SVCGPRERT 599
            P  P GS G P K GLN L G     GPR RT
Sbjct: 1143 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 1174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,670,851
Number of Sequences: 237096
Number of extensions: 2082972
Number of successful extensions: 8262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8251
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)