BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G12 (803 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g25605.1 68415.m03067 expressed protein 31 0.68 At5g14600.1 68418.m01712 expressed protein 29 3.6 At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 29 3.6 At4g17500.1 68417.m02618 ethylene-responsive element-binding pro... 29 4.8 At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 28 8.3 At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 28 8.3 At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 28 8.3 At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 28 8.3 >At2g25605.1 68415.m03067 expressed protein Length = 200 Score = 31.5 bits (68), Expect = 0.68 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -1 Query: 449 SASMRHFDKAARHENPLIVAAGNYIPD--PADRMESSRRRP 333 SA+++HF+ R L+ A+ + +PD AD +ES R+RP Sbjct: 16 SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56 >At5g14600.1 68418.m01712 expressed protein Length = 318 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = -2 Query: 457 ICSRRPCATSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVALNTSSRI 314 +CS PC ++R S + + TF +L ++ +V ++TSS + Sbjct: 209 LCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLLRTYEVKEVKMDTSSMV 256 >At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 500 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%) Frame = +2 Query: 182 SGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 271 SG+++ G CLR NL+ + +VA+ D + ++GD Sbjct: 146 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178 >At4g17500.1 68417.m02618 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment. Length = 188 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 387 GGHDERVLVSCRFIEVAHGRRLQIL 461 GG D+ + V C +EVA G RL +L Sbjct: 164 GGMDKGLTVKCEVVEVARGDRLLVL 188 >At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein similar to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00646: F-box domain Length = 1378 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 397 MRGFSCRAALSKWRMDADCRYLLMDSKSRSSWRSTFLTN 513 M+ ++ AL+ ++ DADC LLMD +F+T+ Sbjct: 1227 MQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTH 1265 >At3g12690.3 68416.m01586 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172 KH+ P S P +T+G+ S+ L+H+ S D L+ Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91 >At3g12690.2 68416.m01585 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172 KH+ P S P +T+G+ S+ L+H+ S D L+ Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91 >At3g12690.1 68416.m01584 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172 KH+ P S P +T+G+ S+ L+H+ S D L+ Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,122,346 Number of Sequences: 28952 Number of extensions: 301124 Number of successful extensions: 858 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 858 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1824072800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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