Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G12
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25605.1 68415.m03067 expressed protein                             31   0.68 
At5g14600.1 68418.m01712 expressed protein                             29   3.6  
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At4g17500.1 68417.m02618 ethylene-responsive element-binding pro...    29   4.8  
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    28   8.3  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   8.3  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   8.3  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   8.3  

>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 449 SASMRHFDKAARHENPLIVAAGNYIPD--PADRMESSRRRP 333
           SA+++HF+   R    L+ A+ + +PD   AD +ES R+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


>At5g14600.1 68418.m01712 expressed protein
          Length = 318

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 457 ICSRRPCATSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVALNTSSRI 314
           +CS  PC   ++R      S +  + TF +L   ++  +V ++TSS +
Sbjct: 209 LCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLLRTYEVKEVKMDTSSMV 256


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +2

Query: 182 SGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 271
           SG+++ G CLR NL+ + +VA+   D + ++GD
Sbjct: 146 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178


>At4g17500.1 68417.m02618 ethylene-responsive element-binding
           protein 1 (ERF1) / EREBP-2 protein identical to
           SP|O80337 Ethylene responsive element binding factor 1
           (EREBP-2 protein) [Arabidopsis thaliana]; a false single
           bp exon was added to circumvent a single basepair
           insertion in the genomic sequence, supported by
           cDNA/genome alignment.
          Length = 188

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 387 GGHDERVLVSCRFIEVAHGRRLQIL 461
           GG D+ + V C  +EVA G RL +L
Sbjct: 164 GGMDKGLTVKCEVVEVARGDRLLVL 188


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 397  MRGFSCRAALSKWRMDADCRYLLMDSKSRSSWRSTFLTN 513
            M+ ++   AL+ ++ DADC  LLMD         +F+T+
Sbjct: 1227 MQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTH 1265


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,346
Number of Sequences: 28952
Number of extensions: 301124
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)