Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G10
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 122 6e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 118 7e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.2
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 122 bits (294), Expect = 6e-29
Identities = 58/87 (66%), Positives = 67/87 (77%)
Frame = -2
Query: 636 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 457
REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178
Query: 456 LLAREVLRLRGVLPRDQRWDVVVDLFF 376
LLAREVLR+RG L R WDV+ DL+F
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYF 205
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -3
Query: 800 RAVVAIXNPADVXVXSSRPFGQRAVLKFAAHTRCYAYCGTF 678
R + I NPADV V S+R +G RAVLKFAAHT A G F
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 703 GATXIAGRFTPGAFTNQIQAAF 638
GAT IAGRFTPG FTN I +
Sbjct: 97 GATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 118 bits (285), Expect = 7e-28
Identities = 57/87 (65%), Positives = 66/87 (75%)
Frame = -2
Query: 636 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 457
REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179
Query: 456 LLAREVLRLRGVLPRDQRWDVVVDLFF 376
LLAREVLRLRG + R W+V+ DL+F
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYF 206
Score = 55.6 bits (128), Expect = 8e-09
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -3
Query: 800 RAVVAIXNPADVXVXSSRPFGQRAVLKFAAHTRCYAYCGTF 678
R + I NPADV V SSRP+G RAVLKFAAHT A G F
Sbjct: 66 RVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 703 GATXIAGRFTPGAFTNQIQAAF 638
GAT IAGRFTPG FTN I +
Sbjct: 98 GATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -2
Query: 630 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 451
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 450 AR 445
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 380 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 478
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 582 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 472
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 474 IGLMWWLLAREVLRLRGVLPRDQRWD 397
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 428 VVCFPVTSAGMLWLICSSXRDPEESEKD 345
V+ FP TS+G LI S PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,402
Number of Sequences: 5004
Number of extensions: 54365
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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