Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G10
(802 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 143 1e-34
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.029
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 32 0.62
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.5
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.4
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 29 5.8
SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05) 28 7.7
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 143 bits (347), Expect = 1e-34
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = -2
Query: 636 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 457
REPRLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+W
Sbjct: 117 REPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFW 176
Query: 456 LLAREVLRLRGVLPRDQRWDVVVDLFF 376
LLAREVLR+RG + R W+++ DL+F
Sbjct: 177 LLAREVLRMRGSISRALPWEIMPDLYF 203
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = -3
Query: 800 RAVVAIXNPADVXVXSSRPFGQRAVLKFAAHTRCYAYCGTF 678
R +V I NPADV V S+RP+GQRA+LK+A+HT G F
Sbjct: 63 RIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRF 103
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1
Query: 703 GATXIAGRFTPGAFTNQIQAAF 638
GAT IAGRFTPG FTNQIQAAF
Sbjct: 95 GATPIAGRFTPGTFTNQIQAAF 116
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.029
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 383 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 550
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 551 ITGMLTY 571
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 684 DVSHQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDI 508
++ +VL +L +++ +D A H P + +Y NI +I L NT S + +D
Sbjct: 240 EIMQEVLAKLNRRLKRENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDS 299
Query: 507 AIPCNTK 487
I N K
Sbjct: 300 GIIANWK 306
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 368 HG*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESV 538
H N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 2 HRGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESK 61
Query: 539 LHKAITG 559
+TG
Sbjct: 62 YEFTLTG 68
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 612 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 517
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 628 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 500
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 480 HSIGLMWWLLAREVLRLRGVLP 415
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 204 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 103
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 631 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 506
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Frame = +2
Query: 350 FHFLQGHG*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLV---LHGIAMSTN 520
+H+ Q G K +ST R+ STP ++ +I+P +W D+ + ++
Sbjct: 159 YHY-QHRGSKRRSTV-KYRFGDASTPLYQDLKDKSSRNIRPWQWHDMTSRYQYAQSLINQ 216
Query: 521 LSGESVLHKAITG----MLTYEASVMG*WSCAGSNTIKR 625
L+ E + +TG ++ ++ASV+ W N +R
Sbjct: 217 LADERLYEFTLTGQFEDVVGHDASVL--WKTVSLNGKRR 253
>SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)
Length = 542
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 423 VLPRDQRWDVVVDLFFXP 370
VL R++ WDVVVD F P
Sbjct: 182 VLAREKEWDVVVDRLFPP 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,843,486
Number of Sequences: 59808
Number of extensions: 462778
Number of successful extensions: 1041
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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