Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G09
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.083
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   2.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.1  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.4  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   5.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.2  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +3

Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGG-FFXP 647
           PPP    GG  PP  P PP   G G   P   PP     G  ++ P
Sbjct: 752 PPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGG 587
           PPPP    G G PP  P PP    GG
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGG 587
           P      PPPP     G  PP  P PP     G
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  RNMARIYQLEVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 182 TALLSASIQASLPSSEIYLQLVDPRHVSSDSFG 84
           T   S +IQ S   S + L   DP H  SD+FG
Sbjct: 34  TTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFG 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 489  PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG 608
            P      PPPP        PP  P PP         P  G
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 227 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYLQLV 117
           TVL + I+ V+K    +   A+   +LP   +YLQL+
Sbjct: 360 TVLSNGIKKVIKTITASSRHANYAKALPRCSVYLQLL 396


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 272 TSXDPSCYFSTPPFDTVLYDNIRT 201
           T  DP+ Y    PFDTV  D + T
Sbjct: 703 TFADPAAYDKISPFDTVDIDGLTT 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,321
Number of Sequences: 5004
Number of extensions: 32498
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)