BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G09 (797 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 36 0.038 SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35 SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47 SB_812| Best HMM Match : FH2 (HMM E-Value=0) 32 0.47 SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 30 1.9 SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 4.4 SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 4.4 SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 5.8 SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 5.8 SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 >SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) Length = 341 Score = 35.9 bits (79), Expect = 0.038 Identities = 15/34 (44%), Positives = 15/34 (44%) Frame = +3 Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 PPP GG PP P PP G G P PP Sbjct: 304 PPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337 Score = 31.9 bits (69), Expect = 0.62 Identities = 15/42 (35%), Positives = 15/42 (35%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 P P PP GG PP P PP G P PP Sbjct: 295 PPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPP 336 >SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 32.7 bits (71), Expect = 0.35 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Frame = +3 Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG--PPXXKXXGGFFXPXGG 656 PPPP GG P P PP P G PP GG P GG Sbjct: 920 PPPPPPP--GGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGG 968 Score = 29.9 bits (64), Expect = 2.5 Identities = 14/42 (33%), Positives = 14/42 (33%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 P PPPP G PP PP G P PP Sbjct: 946 PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPP 987 Score = 28.7 bits (61), Expect = 5.8 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%) Frame = +3 Query: 510 PPPPXKKX---GGGXPPFXPXPPXKXGGGXXXPXXGPP 614 PPPP GGG PP P P GG P PP Sbjct: 956 PPPPGGSAPPPGGGAPPLPPPP----GGSAPPPPPPPP 989 >SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1486 Score = 32.3 bits (70), Expect = 0.47 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 P PPPP + PPF P PP G P GPP Sbjct: 1247 PKFMGLPPPPPGMRPMPPQPPFMPPPPRMQPPGPPGP-PGPP 1287 >SB_812| Best HMM Match : FH2 (HMM E-Value=0) Length = 1430 Score = 32.3 bits (70), Expect = 0.47 Identities = 17/35 (48%), Positives = 17/35 (48%) Frame = +3 Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 PPPP GGG F P PP GGG P PP Sbjct: 653 PPPPP---GGGM--FPPPPPPPPGGGVPGPPKPPP 682 Score = 28.3 bits (60), Expect = 7.6 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXP-PFXPXPP 569 P PPPP GGG P P P PP Sbjct: 656 PPGGGMFPPPPPPPPGGGVPGPPKPPPP 683 >SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) Length = 1083 Score = 30.3 bits (65), Expect = 1.9 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 293 IIGXPSXTSXDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 165 I G S ++ D Y P D V +N+ TVL DNK L++ Sbjct: 299 IRGGSSSSTPDLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341 >SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 964 Score = 29.9 bits (64), Expect = 2.5 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 10/58 (17%) Frame = +3 Query: 510 PPPPXKKXGGGXPP------FXPXPPXKXGGGXXXPXXG----PPXXKXXGGFFXPXG 653 PPPP G G PP P PP GG P G PP GG P G Sbjct: 547 PPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPG 604 Score = 29.5 bits (63), Expect = 3.3 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Frame = +3 Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653 PPP GGG PP P GGG P G PP GG P G Sbjct: 493 PPPGAGQGGGPPP----PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPG 540 Score = 29.1 bits (62), Expect = 4.4 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Frame = +3 Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653 PPPP GGG PP P G G P G PP GG P G Sbjct: 503 PPPPGAGQGGGPPP----PGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPG 551 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 29.1 bits (62), Expect = 4.4 Identities = 18/55 (32%), Positives = 18/55 (32%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXG 653 P PPPP G PP P P G GPP GF P G Sbjct: 31 PPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPP---GFQGPPG 82 >SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) Length = 514 Score = 29.1 bits (62), Expect = 4.4 Identities = 17/56 (30%), Positives = 19/56 (33%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXGG 656 P PPPP + G P P PP + P G P G P GG Sbjct: 308 PPSRGSAPPPPPARMGTAPP---PPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGG 360 >SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 29.1 bits (62), Expect = 4.4 Identities = 15/42 (35%), Positives = 16/42 (38%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614 P PPPP G PP PP + G P GPP Sbjct: 452 PQLPPNLPPPPGGMRGMPPPPMGMYPPPR---GFPPPPFGPP 490 >SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) Length = 768 Score = 28.7 bits (61), Expect = 5.8 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 9/52 (17%) Frame = +3 Query: 510 PPPPXKKXG---GGXPPFXPXPPXKXGGGXXXP------XXGPPXXKXXGGF 638 PPPP G GG PP P PP GG P PP GGF Sbjct: 661 PPPPPPPPGGQAGGAPP--PPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGGF 710 >SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 305 Score = 28.7 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 15/41 (36%) Frame = +3 Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGP 611 P PPPP GG PP P P GG P P Sbjct: 133 PATRAPPPPPPIAPATGGPPPPPPIAP-ATGGPPPPPPIAP 172 >SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 28.3 bits (60), Expect = 7.6 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Frame = +3 Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGG--XXXPXXGPP 614 PP + G G P P PP GG P GPP Sbjct: 371 PPGMRPPGAGNGPGGPPPPWSKPGGILPGPPPPGPP 406 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,879,495 Number of Sequences: 59808 Number of extensions: 277809 Number of successful extensions: 886 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 745 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2203769656 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -