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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G09
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               36   0.038
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.35 
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           32   0.47 
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 30   1.9  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   4.4  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   4.4  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   5.8  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   5.8  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
           PPP    GG  PP  P PP   G G   P   PP
Sbjct: 304 PPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337



 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
           P      P PP     GG PP  P PP    G    P   PP
Sbjct: 295 PPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPP 336


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = +3

Query: 510  PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG--PPXXKXXGGFFXPXGG 656
            PPPP     GG  P  P PP         P  G  PP     GG   P GG
Sbjct: 920  PPPPPPP--GGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGG 968



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 489  PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
            P      PPPP    G   PP    PP     G   P   PP
Sbjct: 946  PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPP 987



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +3

Query: 510  PPPPXKKX---GGGXPPFXPXPPXKXGGGXXXPXXGPP 614
            PPPP       GGG PP  P P    GG    P   PP
Sbjct: 956  PPPPGGSAPPPGGGAPPLPPPP----GGSAPPPPPPPP 989


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 489  PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
            P      PPPP  +     PPF P PP     G   P  GPP
Sbjct: 1247 PKFMGLPPPPPGMRPMPPQPPFMPPPPRMQPPGPPGP-PGPP 1287


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +3

Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
           PPPP    GGG   F P PP   GGG   P   PP
Sbjct: 653 PPPPP---GGGM--FPPPPPPPPGGGVPGPPKPPP 682



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXP-PFXPXPP 569
           P      PPPP    GGG P P  P PP
Sbjct: 656 PPGGGMFPPPPPPPPGGGVPGPPKPPPP 683


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 293 IIGXPSXTSXDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 165
           I G  S ++ D   Y    P D V  +N+ TVL DNK   L++
Sbjct: 299 IRGGSSSSTPDLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
 Frame = +3

Query: 510 PPPPXKKXGGGXPP------FXPXPPXKXGGGXXXPXXG----PPXXKXXGGFFXPXG 653
           PPPP    G G PP        P PP    GG   P  G    PP     GG   P G
Sbjct: 547 PPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPG 604



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
 Frame = +3

Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653
           PPP    GGG PP    P    GGG   P  G     PP     GG   P G
Sbjct: 493 PPPGAGQGGGPPP----PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPG 540



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
 Frame = +3

Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653
           PPPP    GGG PP    P    G G   P  G     PP     GG   P G
Sbjct: 503 PPPPGAGQGGGPPP----PGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPG 551


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXG 653
           P      PPPP    G   PP  P P    G        GPP      GF  P G
Sbjct: 31  PPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPP---GFQGPPG 82


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXGG 656
           P      PPPP  + G   P   P PP +       P  G P     G    P GG
Sbjct: 308 PPSRGSAPPPPPARMGTAPP---PPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGG 360


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
           P      PPPP    G   PP    PP +   G   P  GPP
Sbjct: 452 PQLPPNLPPPPGGMRGMPPPPMGMYPPPR---GFPPPPFGPP 490


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
 Frame = +3

Query: 510 PPPPXKKXG---GGXPPFXPXPPXKXGGGXXXP------XXGPPXXKXXGGF 638
           PPPP    G   GG PP  P PP   GG    P         PP     GGF
Sbjct: 661 PPPPPPPPGGQAGGAPP--PPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGGF 710


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGP 611
           P      PPPP     GG PP  P  P   GG    P   P
Sbjct: 133 PATRAPPPPPPIAPATGGPPPPPPIAP-ATGGPPPPPPIAP 172


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +3

Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGG--XXXPXXGPP 614
           PP  +  G G  P  P PP    GG     P  GPP
Sbjct: 371 PPGMRPPGAGNGPGGPPPPWSKPGGILPGPPPPGPP 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,879,495
Number of Sequences: 59808
Number of extensions: 277809
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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