Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G09
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 36 0.038
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 32 0.47
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 30 1.9
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 4.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 4.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 5.8
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 5.8
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 35.9 bits (79), Expect = 0.038
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
PPP GG PP P PP G G P PP
Sbjct: 304 PPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
P P PP GG PP P PP G P PP
Sbjct: 295 PPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPP 336
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG--PPXXKXXGGFFXPXGG 656
PPPP GG P P PP P G PP GG P GG
Sbjct: 920 PPPPPPP--GGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGG 968
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
P PPPP G PP PP G P PP
Sbjct: 946 PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPP 987
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = +3
Query: 510 PPPPXKKX---GGGXPPFXPXPPXKXGGGXXXPXXGPP 614
PPPP GGG PP P P GG P PP
Sbjct: 956 PPPPGGSAPPPGGGAPPLPPPP----GGSAPPPPPPPP 989
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
P PPPP + PPF P PP G P GPP
Sbjct: 1247 PKFMGLPPPPPGMRPMPPQPPFMPPPPRMQPPGPPGP-PGPP 1287
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +3
Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
PPPP GGG F P PP GGG P PP
Sbjct: 653 PPPPP---GGGM--FPPPPPPPPGGGVPGPPKPPP 682
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXP-PFXPXPP 569
P PPPP GGG P P P PP
Sbjct: 656 PPGGGMFPPPPPPPPGGGVPGPPKPPPP 683
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 293 IIGXPSXTSXDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 165
I G S ++ D Y P D V +N+ TVL DNK L++
Sbjct: 299 IRGGSSSSTPDLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Frame = +3
Query: 510 PPPPXKKXGGGXPP------FXPXPPXKXGGGXXXPXXG----PPXXKXXGGFFXPXG 653
PPPP G G PP P PP GG P G PP GG P G
Sbjct: 547 PPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPG 604
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = +3
Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653
PPP GGG PP P GGG P G PP GG P G
Sbjct: 493 PPPGAGQGGGPPP----PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPG 540
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Frame = +3
Query: 510 PPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXG-----PPXXKXXGGFFXPXG 653
PPPP GGG PP P G G P G PP GG P G
Sbjct: 503 PPPPGAGQGGGPPP----PGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPG 551
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXG 653
P PPPP G PP P P G GPP GF P G
Sbjct: 31 PPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPP---GFQGPPG 82
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPPXXKXXGGFFXPXGG 656
P PPPP + G P P PP + P G P G P GG
Sbjct: 308 PPSRGSAPPPPPARMGTAPP---PPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGG 360
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGPP 614
P PPPP G PP PP + G P GPP
Sbjct: 452 PQLPPNLPPPPGGMRGMPPPPMGMYPPPR---GFPPPPFGPP 490
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Frame = +3
Query: 510 PPPPXKKXG---GGXPPFXPXPPXKXGGGXXXP------XXGPPXXKXXGGF 638
PPPP G GG PP P PP GG P PP GGF
Sbjct: 661 PPPPPPPPGGQAGGAPP--PPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGGF 710
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 489 PXXXXXXPPPPXKKXGGGXPPFXPXPPXKXGGGXXXPXXGP 611
P PPPP GG PP P P GG P P
Sbjct: 133 PATRAPPPPPPIAPATGGPPPPPPIAP-ATGGPPPPPPIAP 172
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +3
Query: 513 PPPXKKXGGGXPPFXPXPPXKXGGG--XXXPXXGPP 614
PP + G G P P PP GG P GPP
Sbjct: 371 PPGMRPPGAGNGPGGPPPPWSKPGGILPGPPPPGPP 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,879,495
Number of Sequences: 59808
Number of extensions: 277809
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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