Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G08
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.6  
At3g53440.2 68416.m05898 expressed protein                             30   2.1  
At3g53440.1 68416.m05897 expressed protein                             30   2.1  
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M...    29   3.6  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.6  
At2g19600.1 68415.m02289 K+ efflux antiporter, putative (KEA4) s...    29   3.6  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.7  
At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6) M...    28   6.3  
At1g64340.1 68414.m07291 hypothetical protein                          28   8.3  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 526 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 350
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 349 SLAESGKD 326
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 111 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 284
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 108 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 287
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 288 LEPPDSRGSTVSIS 329
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 108 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 287
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 288 LEPPDSRGSTVSIS 329
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; related to
           glutathione-regulated potassium-efflux system protein
           [Escherichia coli] GP|606284|gb|AAA58147
          Length = 568

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 572 LGEFCFAMIGRADIEXIKKQRRYERLAATSQLSLVVT 682
           +GEF F ++ RA    + + + Y  L  T+ LSLV T
Sbjct: 487 IGEFAFVLLSRASNLHVIEGKMYLLLLGTTALSLVTT 523


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +3

Query: 45  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 224
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 225 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 344
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At2g19600.1 68415.m02289 K+ efflux antiporter, putative (KEA4)
           similar to glutathione-regulated potassium-efflux system
           protein KEFB, Escherichia coli, SWISSPROT:P45522;
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; Note: non-consensus
           splice site (GC) in intron 14
          Length = 592

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 572 LGEFCFAMIGRADIEXIKKQRRYERLAATSQLSLVVT 682
           +GEF F ++ RA    + + + Y  L  T+ LSLV T
Sbjct: 502 IGEFAFVLLSRASNLHLIESKLYLLLLGTTALSLVTT 538


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +3

Query: 102 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 281
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 282 HCLEPPDSRGSTVS 323
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           glutathione-regulated potassium-efflux system protein
           KEFB, Escherichia coli, SWISSPROT:P45522
          Length = 597

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 572 LGEFCFAMIGRADIEXIKKQRRYERLAATSQLSLVVT 682
           +GEF F ++ RA    + + + Y  L  T+ LSLV T
Sbjct: 510 IGEFAFVLLSRASNLHLIEGKLYLLLLGTTALSLVTT 546


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 746 DCESTAYRSFSIKSF*QEVPEKLPPGITGLWQPSVHS 636
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,185
Number of Sequences: 28952
Number of extensions: 364827
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)