Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G04
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 385 PPCAASPPDQQPSTGHPRHP--APDSPYG 465
           PP   SPP   P   +P+HP  AP   +G
Sbjct: 39  PPACYSPPQVAPQ--YPQHPYAAPAPGHG 65


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 332 PGDGVPSY*QDGYRRRRAFGAHCAVXVGFVESEWWGSMGFSR 207
           PG  +P +  +G    +   AH  +    ++S+  GSMG +R
Sbjct: 120 PGAALPFFCHNGDPLSQPPPAHMGIPPYQLDSKTAGSMGLTR 161


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 332 PGDGVPSY*QDGYRRRRAFGAHCAVXVGFVESEWWGSMGFSR 207
           PG  +P +  +G    +   AH  +    ++S+  GSMG +R
Sbjct: 12  PGAALPFFCHNGDPLSQPPPAHMGIPPYQLDSKTAGSMGLTR 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,393
Number of Sequences: 336
Number of extensions: 4445
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)