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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G04
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    30   0.33 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   1.0  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    29   1.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   7.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   7.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 27/89 (30%), Positives = 34/89 (38%)
 Frame = +3

Query: 129 PSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPILL 308
           P P P S + LRL    RS  P+ R   +P R+P    H +       A+G P P P   
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPR-SGRPRRSPS-PSHLSIPSTLPPADGVPKPTPDGF 386

Query: 309 IGRHSIPGKIPQDVVSETHRERCTGATLR 395
             R      IP D +    R    G   R
Sbjct: 387 PRRFERDPTIPPDSIKVYSRTLFLGGITR 415


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -3

Query: 589 GFATWSWRSV-RLRSAKGSGIPLRLHSEEGGVGGTGAKLPFISRRGCRVPGXGGARYSAV 413
           G AT+SW         KG+G  L +  EE  +G  G    F++     V    GA+    
Sbjct: 454 GAATFSWEDGGETLVVKGNGGKLAVPKEELYLGNAGTAARFLTGIAALVSSKDGAKVVLT 513

Query: 412 GPVVRRRKVAPV 377
           G    R KV P+
Sbjct: 514 GN--HRMKVRPI 523


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 443  RHPTAPTGDERELRARAAHSAFFAVKPKRD 532
            RHP    G +REL  RA  S +F    KRD
Sbjct: 1036 RHPVVSCGRKRELILRALCSGYFTNVAKRD 1065


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
 Frame = +3

Query: 144 ISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPI-LLIGRH 320
           +S RR   EK   ST   E  P   H   P+R        T   + SPS VP+       
Sbjct: 337 LSARRALFEKKESSTKNVEN-PVSHHLKSPVRTSFPPASTTASKQDSPSTVPVDKQETAK 395

Query: 321 SIPGKIPQDVVSETHRERCTGATLR-RLTTGPTAEYRAPP-XPGTRQPLREMN 473
            I  ++  +  S     R + A LR R      +E   PP  P T   +   N
Sbjct: 396 PINKQVSSNETSAQEEPRESVAALRARFAKANVSENNDPPTFPKTAAKISSFN 448


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 382 EPPCAASPPDQQPSTGHPRHPAPDSP 459
           +PP AA+P    PS  +P  P P  P
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 379 QEPPCAASPPDQQPSTGHPRHPAPDSP 459
           +EPP    P  ++P  G P  P PD P
Sbjct: 105 REPPLPNEPVPEEPLPGEP--PLPDEP 129


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 418 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 305
           A   V+  RK+A P  R R  S  +S GIF  +  +P++
Sbjct: 31  ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 142 QFLTGDYALKKAREALAPQNDYRLNPIEP 228
           + +TGDY  ++  + L    +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 250 VSWSRSGGARWGLVGSRSAGQ 188
           ++W+   G RW L GS  +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 385  PPCAASPPDQQPSTGHPRHPAPDS 456
            PP + +PP  +PS G P  P P +
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPST 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,882
Number of Sequences: 5004
Number of extensions: 65699
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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