BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G04 (798 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.33 SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 29 1.0 SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 1.0 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.8 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1 SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.2 SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.2 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 7.2 SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 9.5 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 30.3 bits (65), Expect = 0.33 Identities = 27/89 (30%), Positives = 34/89 (38%) Frame = +3 Query: 129 PSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPILL 308 P P P S + LRL RS P+ R +P R+P H + A+G P P P Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPR-SGRPRRSPS-PSHLSIPSTLPPADGVPKPTPDGF 386 Query: 309 IGRHSIPGKIPQDVVSETHRERCTGATLR 395 R IP D + R G R Sbjct: 387 PRRFERDPTIPPDSIKVYSRTLFLGGITR 415 >SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1573 Score = 28.7 bits (61), Expect = 1.0 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = -3 Query: 589 GFATWSWRSV-RLRSAKGSGIPLRLHSEEGGVGGTGAKLPFISRRGCRVPGXGGARYSAV 413 G AT+SW KG+G L + EE +G G F++ V GA+ Sbjct: 454 GAATFSWEDGGETLVVKGNGGKLAVPKEELYLGNAGTAARFLTGIAALVSSKDGAKVVLT 513 Query: 412 GPVVRRRKVAPV 377 G R KV P+ Sbjct: 514 GN--HRMKVRPI 523 >SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosaccharomyces pombe|chr 1|||Manual Length = 1168 Score = 28.7 bits (61), Expect = 1.0 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +2 Query: 443 RHPTAPTGDERELRARAAHSAFFAVKPKRD 532 RHP G +REL RA S +F KRD Sbjct: 1036 RHPVVSCGRKRELILRALCSGYFTNVAKRD 1065 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 27.9 bits (59), Expect = 1.8 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Frame = +3 Query: 144 ISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPI-LLIGRH 320 +S RR EK ST E P H P+R T + SPS VP+ Sbjct: 337 LSARRALFEKKESSTKNVEN-PVSHHLKSPVRTSFPPASTTASKQDSPSTVPVDKQETAK 395 Query: 321 SIPGKIPQDVVSETHRERCTGATLR-RLTTGPTAEYRAPP-XPGTRQPLREMN 473 I ++ + S R + A LR R +E PP P T + N Sbjct: 396 PINKQVSSNETSAQEEPRESVAALRARFAKANVSENNDPPTFPKTAAKISSFN 448 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 26.6 bits (56), Expect = 4.1 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 382 EPPCAASPPDQQPSTGHPRHPAPDSP 459 +PP AA+P PS +P P P P Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPP 197 >SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 25.8 bits (54), Expect = 7.2 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 379 QEPPCAASPPDQQPSTGHPRHPAPDSP 459 +EPP P ++P G P P PD P Sbjct: 105 REPPLPNEPVPEEPLPGEP--PLPDEP 129 >SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe|chr 3|||Manual Length = 565 Score = 25.8 bits (54), Expect = 7.2 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 418 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 305 A V+ RK+A P R R S +S GIF + +P++ Sbjct: 31 ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 25.8 bits (54), Expect = 7.2 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 142 QFLTGDYALKKAREALAPQNDYRLNPIEP 228 + +TGDY ++ + L +Y +N IEP Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607 >SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 25.4 bits (53), Expect = 9.5 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -3 Query: 250 VSWSRSGGARWGLVGSRSAGQ 188 ++W+ G RW L GS +G+ Sbjct: 283 INWTIREGERWALTGSNGSGK 303 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 25.4 bits (53), Expect = 9.5 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 385 PPCAASPPDQQPSTGHPRHPAPDS 456 PP + +PP +PS G P P P + Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPST 1215 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,190,882 Number of Sequences: 5004 Number of extensions: 65699 Number of successful extensions: 205 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 205 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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