Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G04
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.33
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 29 1.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 1.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.2
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 7.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.33
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +3
Query: 129 PSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPILL 308
P P P S + LRL RS P+ R +P R+P H + A+G P P P
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPR-SGRPRRSPS-PSHLSIPSTLPPADGVPKPTPDGF 386
Query: 309 IGRHSIPGKIPQDVVSETHRERCTGATLR 395
R IP D + R G R
Sbjct: 387 PRRFERDPTIPPDSIKVYSRTLFLGGITR 415
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -3
Query: 589 GFATWSWRSV-RLRSAKGSGIPLRLHSEEGGVGGTGAKLPFISRRGCRVPGXGGARYSAV 413
G AT+SW KG+G L + EE +G G F++ V GA+
Sbjct: 454 GAATFSWEDGGETLVVKGNGGKLAVPKEELYLGNAGTAARFLTGIAALVSSKDGAKVVLT 513
Query: 412 GPVVRRRKVAPV 377
G R KV P+
Sbjct: 514 GN--HRMKVRPI 523
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 443 RHPTAPTGDERELRARAAHSAFFAVKPKRD 532
RHP G +REL RA S +F KRD
Sbjct: 1036 RHPVVSCGRKRELILRALCSGYFTNVAKRD 1065
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.8
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
Frame = +3
Query: 144 ISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGYRTVRAEGSPSPVPI-LLIGRH 320
+S RR EK ST E P H P+R T + SPS VP+
Sbjct: 337 LSARRALFEKKESSTKNVEN-PVSHHLKSPVRTSFPPASTTASKQDSPSTVPVDKQETAK 395
Query: 321 SIPGKIPQDVVSETHRERCTGATLR-RLTTGPTAEYRAPP-XPGTRQPLREMN 473
I ++ + S R + A LR R +E PP P T + N
Sbjct: 396 PINKQVSSNETSAQEEPRESVAALRARFAKANVSENNDPPTFPKTAAKISSFN 448
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 382 EPPCAASPPDQQPSTGHPRHPAPDSP 459
+PP AA+P PS +P P P P
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 379 QEPPCAASPPDQQPSTGHPRHPAPDSP 459
+EPP P ++P G P P PD P
Sbjct: 105 REPPLPNEPVPEEPLPGEP--PLPDEP 129
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 418 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 305
A V+ RK+A P R R S +S GIF + +P++
Sbjct: 31 ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 142 QFLTGDYALKKAREALAPQNDYRLNPIEP 228
+ +TGDY ++ + L +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 250 VSWSRSGGARWGLVGSRSAGQ 188
++W+ G RW L GS +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 385 PPCAASPPDQQPSTGHPRHPAPDS 456
PP + +PP +PS G P P P +
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPST 1215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,882
Number of Sequences: 5004
Number of extensions: 65699
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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