Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G04
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 377 HRSHLAPPHHR 409
           H SH A PHH+
Sbjct: 433 HHSHAATPHHQ 443


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 137 SPNFSQETTP*KRR 178
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 299 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 427
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 299 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 427
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,100
Number of Sequences: 438
Number of extensions: 5822
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)