Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G01
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               150   1e-36
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.037
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.4  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.4  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   4.3  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   29   5.6  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      28   7.5  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   9.9  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        28   9.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  150 bits (363), Expect = 1e-36
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = -3

Query: 631 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
           FRE RLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+
Sbjct: 116 FREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMF 175

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
           WLLAREVLR+RG + R   W+++ DL+FYR P
Sbjct: 176 WLLAREVLRMRGSISRALPWEIMPDLYFYRDP 207



 Score = 34.7 bits (76), Expect = 0.086
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655
           P     + K   HTG T IAGRFTPG F
Sbjct: 81  PYGQRAILKYASHTGATPIAGRFTPGTF 108


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 375  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 542
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 543  ITGMLTY 563
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 620  SSXDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 492
            S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 880  SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 604 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 509
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 472 HSIGLMWWLLAREVLRLRGVLP 407
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 196  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 95
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 370 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 489
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 363 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 533
           R  N+  T   ++   STP      + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 534 HKAITG 551
              +TG
Sbjct: 63  EFTLTG 68


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 628 REXR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 479
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 414 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 536
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 365 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 511
           V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 526 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 395
           +SPL +  I +PCNT +S+     W+LLA  +  ++ VL  D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 396 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 536
           RWS  +TPR   TS     N  H+ P+  + D+  H  A + +L   S ++
Sbjct: 62  RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,059,130
Number of Sequences: 59808
Number of extensions: 403292
Number of successful extensions: 899
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)