BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G01 (786 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 135 4e-32 At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 130 1e-30 At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 114 7e-26 At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.1 At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 31 1.1 At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.6 >At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379 Length = 298 Score = 135 bits (326), Expect = 4e-32 Identities = 60/105 (57%), Positives = 74/105 (70%) Frame = -3 Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491 HT + + F E RLLI+ DP DHQPI E + NIP+IA C+TDSP+RFVDI IP Sbjct: 107 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIP 166 Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356 N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P Sbjct: 167 ANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREP 211 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -1 Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655 P V K +TG IAGR TPG F Sbjct: 85 PYGQRAVLKFAQYTGANAIAGRHTPGTF 112 >At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 280 Score = 130 bits (313), Expect = 1e-30 Identities = 59/105 (56%), Positives = 72/105 (68%) Frame = -3 Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491 HT + + F E RLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP Sbjct: 108 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIP 167 Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356 N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P Sbjct: 168 ANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREP 212 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -1 Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655 P V K +TG IAGR TPG F Sbjct: 86 PYGQRAVLKFAQYTGVNAIAGRHTPGTF 113 >At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 332 Score = 114 bits (274), Expect = 7e-26 Identities = 52/98 (53%), Positives = 66/98 (67%) Frame = -3 Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491 HT + + F E RLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP Sbjct: 108 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIP 167 Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 377 N K HSIG ++WLLAR VL++RG + Q+WDV+V+ Sbjct: 168 ANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -1 Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655 P V K +TG IAGR TPG F Sbjct: 86 PYGQRAVLKFAQYTGVNAIAGRHTPGTF 113 >At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family protein low similarity to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam profile PF01743: polyA polymerase family protein Length = 527 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -2 Query: 341 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 228 +++++PR+R W QLN K L LS K + L+GLK Sbjct: 54 KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91 >At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2) identical to SP|Q9GCB9 Mitochondrial ribosomal protein S2 {Arabidopsis thaliana}; contains Pfam profile PF00318: ribosomal protein S2 Length = 219 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 613 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 473 ++V D + I EAS + IPV+A+ + + PL F + I P + S Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181 >At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family Length = 146 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -3 Query: 526 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 389 D L ++A+ C TKS + + ++ V + +P +RWD Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,381,388 Number of Sequences: 28952 Number of extensions: 266058 Number of successful extensions: 657 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1765546400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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