Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_G01
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 135 4e-32
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 130 1e-30
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 114 7e-26
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.1
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 31 1.1
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.6
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 135 bits (326), Expect = 4e-32
Identities = 60/105 (57%), Positives = 74/105 (70%)
Frame = -3
Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491
HT + + F E RLLI+ DP DHQPI E + NIP+IA C+TDSP+RFVDI IP
Sbjct: 107 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIP 166
Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P
Sbjct: 167 ANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREP 211
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655
P V K +TG IAGR TPG F
Sbjct: 85 PYGQRAVLKFAQYTGANAIAGRHTPGTF 112
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 130 bits (313), Expect = 1e-30
Identities = 59/105 (56%), Positives = 72/105 (68%)
Frame = -3
Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491
HT + + F E RLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP
Sbjct: 108 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIP 167
Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P
Sbjct: 168 ANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREP 212
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655
P V K +TG IAGR TPG F
Sbjct: 86 PYGQRAVLKFAQYTGVNAIAGRHTPGTF 113
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 114 bits (274), Expect = 7e-26
Identities = 52/98 (53%), Positives = 66/98 (67%)
Frame = -3
Query: 670 HTRXFXXTRSKXHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 491
HT + + F E RLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP
Sbjct: 108 HTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIP 167
Query: 490 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 377
N K HSIG ++WLLAR VL++RG + Q+WDV+V+
Sbjct: 168 ANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 738 PXXXXXVXKXPXHTGXTXIAGRFTPGXF 655
P V K +TG IAGR TPG F
Sbjct: 86 PYGQRAVLKFAQYTGVNAIAGRHTPGTF 113
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2
Query: 341 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 228
+++++PR+R W QLN K L LS K + L+GLK
Sbjct: 54 KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 613 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 473
++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 526 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 389
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,388
Number of Sequences: 28952
Number of extensions: 266058
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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