Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F24
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741...    29   3.4  

>02_02_0498 -
           10973243-10973345,10973850-10973882,10974104-10974166,
           10975934-10976004,10976703-10976789,10976870-10976983,
           10977395-10977508,10977784-10977844,10978608-10978923,
           10979031-10979721,10979948-10980073,10980180-10980247,
           10980314-10980449,10981109-10981238,10981266-10981382,
           10981614-10981763,10982158-10982266,10982584-10982701,
           10984143-10984168,10984219-10984256,10986267-10986373
          Length = 925

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 188 SHSWAPGVVSVDQLVEGEDLGSRLLPLSSTGGAESDITRSD 66
           SH+ A G+  V+  ++     SRLL  SST   ES   R D
Sbjct: 487 SHASASGLSGVEMQIDRGQPSSRLLGSSSTSNHESSTARDD 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,944
Number of Sequences: 37544
Number of extensions: 190711
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)