Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F24
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical
           protein F48A11.5a protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 120 TSSSFFHRRRGVRHNPVRPPS 58
           +SS+ F  RRG R NPV PP+
Sbjct: 162 SSSASFSSRRGTRANPVPPPN 182


>AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical
           protein F48A11.5b protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 120 TSSSFFHRRRGVRHNPVRPPS 58
           +SS+ F  RRG R NPV PP+
Sbjct: 157 SSSASFSSRRGTRANPVPPPN 177


>Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical
           protein F46A8.4 protein.
          Length = 221

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 120 TSSSFFHRRRGVRHNPVRPPSAGYP*RVGFPIDTKKKK 7
           +S  +  RR G RH P RPP    P R   P+ T K +
Sbjct: 37  SSEDYSGRRGGGRHRPPRPPR---PPRPSRPVSTPKPR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,158
Number of Sequences: 27780
Number of extensions: 138124
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)