BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_F22 (805 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 34 0.52 CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 34 0.52 BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 34 0.52 BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 34 0.52 L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 31 3.7 BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 31 3.7 BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 31 3.7 BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 31 3.7 AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 31 3.7 Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.9 BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.9 AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.9 AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.9 BC100287-1|AAI00288.1| 366|Homo sapiens AFF4 protein protein. 30 8.5 BC063007-1|AAH63007.1| 353|Homo sapiens AFF4 protein protein. 30 8.5 BC025700-1|AAH25700.1| 365|Homo sapiens AFF4 protein protein. 30 8.5 AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein. 30 8.5 AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein. 30 8.5 AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q... 30 8.5 >L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha protein. Length = 598 Score = 34.3 bits (75), Expect = 0.52 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546 P G+ + + TP + KRSV +RSPH L PS +S Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152 >CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. Length = 598 Score = 34.3 bits (75), Expect = 0.52 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546 P G+ + + TP + KRSV +RSPH L PS +S Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152 >BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed), alpha 2 (70kD subunit) protein. Length = 598 Score = 34.3 bits (75), Expect = 0.52 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546 P G+ + + TP + KRSV +RSPH L PS +S Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152 >BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed), alpha 2 (70kD subunit) protein. Length = 598 Score = 34.3 bits (75), Expect = 0.52 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546 P G+ + + TP + KRSV +RSPH L PS +S Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152 >L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. Length = 305 Score = 31.5 bits (68), Expect = 3.7 Identities = 31/88 (35%), Positives = 42/88 (47%) Frame = -3 Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237 G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + + Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104 Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153 GS+S T R S S S S SR R Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130 >BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1, serine-rich domain protein. Length = 305 Score = 31.5 bits (68), Expect = 3.7 Identities = 31/88 (35%), Positives = 42/88 (47%) Frame = -3 Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237 G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + + Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104 Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153 GS+S T R S S S S SR R Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130 >BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1, serine-rich domain protein. Length = 305 Score = 31.5 bits (68), Expect = 3.7 Identities = 31/88 (35%), Positives = 42/88 (47%) Frame = -3 Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237 G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + + Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104 Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153 GS+S T R S S S S SR R Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130 >BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1, serine-rich domain protein. Length = 305 Score = 31.5 bits (68), Expect = 3.7 Identities = 31/88 (35%), Positives = 42/88 (47%) Frame = -3 Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237 G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + + Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104 Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153 GS+S T R S S S S SR R Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130 >AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor RNPS1 protein. Length = 282 Score = 31.5 bits (68), Expect = 3.7 Identities = 31/88 (35%), Positives = 42/88 (47%) Frame = -3 Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237 G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + + Sbjct: 24 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81 Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153 GS+S T R S S S S SR R Sbjct: 82 RSGSSS--TSRSSSSSSSSGSPSPSRRR 107 >Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. Length = 1566 Score = 31.1 bits (67), Expect = 4.9 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 350 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216 GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103 >BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1 protein. Length = 1581 Score = 31.1 bits (67), Expect = 4.9 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 350 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216 GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118 >AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-interacting protein complex component DRIP205 protein. Length = 1566 Score = 31.1 bits (67), Expect = 4.9 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 350 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216 GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103 >AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone receptor-associated protein complex component TRAP220 protein. Length = 1581 Score = 31.1 bits (67), Expect = 4.9 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 350 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216 GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118 >BC100287-1|AAI00288.1| 366|Homo sapiens AFF4 protein protein. Length = 366 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269 >BC063007-1|AAH63007.1| 353|Homo sapiens AFF4 protein protein. Length = 353 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269 >BC025700-1|AAH25700.1| 365|Homo sapiens AFF4 protein protein. Length = 365 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269 >AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein. Length = 1163 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQGSMEPK 269 >AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein. Length = 1163 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269 >AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q31 variant protein. Length = 907 Score = 30.3 bits (65), Expect = 8.5 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198 +R S P GKP +S + H S + + + H + +SP + + + + +HS Sbjct: 183 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 241 Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81 SF P L+S S +Q+ TA R +EP+ Sbjct: 242 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 276 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 110,526,923 Number of Sequences: 237096 Number of extensions: 2478470 Number of successful extensions: 9616 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 9174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9595 length of database: 76,859,062 effective HSP length: 89 effective length of database: 55,757,518 effective search space used: 9924838204 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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