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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F22
         (805 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    34   0.52 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                34   0.52 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    34   0.52 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    34   0.52 
L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.    31   3.7  
BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,...    31   3.7  
BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,...    31   3.7  
BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,...    31   3.7  
AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor...    31   3.7  
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          31   4.9  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    31   4.9  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    31   4.9  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   4.9  
BC100287-1|AAI00288.1|  366|Homo sapiens AFF4 protein protein.         30   8.5  
BC063007-1|AAH63007.1|  353|Homo sapiens AFF4 protein protein.         30   8.5  
BC025700-1|AAH25700.1|  365|Homo sapiens AFF4 protein protein.         30   8.5  
AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein.         30   8.5  
AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein.       30   8.5  
AB209547-1|BAD92784.1|  907|Homo sapiens ALL1 fused gene from 5q...    30   8.5  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.52
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.52
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.52
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.52
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 656 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 546
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -3

Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153
             GS+S  T R S  S S    S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130


>BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -3

Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153
             GS+S  T R S  S S    S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130


>BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -3

Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153
             GS+S  T R S  S S    S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130


>BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -3

Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153
             GS+S  T R S  S S    S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130


>AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor
           RNPS1 protein.
          Length = 282

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -3

Query: 416 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 237
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 24  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81

Query: 236 TKGSTSELTHRHSPLSFSPDLLSGSRFR 153
             GS+S  T R S  S S    S SR R
Sbjct: 82  RSGSSS--TSRSSSSSSSSGSPSPSRRR 107


>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 350  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 350  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP205
            protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 350  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP220
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 350  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 216
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>BC100287-1|AAI00288.1|  366|Homo sapiens AFF4 protein protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269


>BC063007-1|AAH63007.1|  353|Homo sapiens AFF4 protein protein.
          Length = 353

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269


>BC025700-1|AAH25700.1|  365|Homo sapiens AFF4 protein protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269


>AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein.
          Length = 1163

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQGSMEPK 269


>AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein.
          Length = 1163

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269


>AB209547-1|BAD92784.1|  907|Homo sapiens ALL1 fused gene from 5q31
           variant protein.
          Length = 907

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -3

Query: 371 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 198
           +R S P GKP   +S  + H  S  + + +  H + +SP   + +  +       + +HS
Sbjct: 183 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 241

Query: 197 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 81
             SF P L+S S       +Q+ TA  R       +EP+
Sbjct: 242 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 276


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,526,923
Number of Sequences: 237096
Number of extensions: 2478470
Number of successful extensions: 9616
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9595
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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