Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F22
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.10 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.18 
AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   3.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -1

Query: 670 SKLSLRNK---VTLYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 530
           +K S  NK   + LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = -1

Query: 775 GVTLDRGMTFPSPYKTVRXRAAFIXGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASV 596
           G  +   + F   +K     A F    ++    + +K  +   + LYKT IRP + Y +V
Sbjct: 151 GFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGTV 207

Query: 595 VFAHAARTHLKSLQVIQSRFCR 530
           V +   ++  K+++ +Q+ F R
Sbjct: 208 VSSPTKKSDEKAIESVQNAFTR 229


>AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical
           protein F58D5.5 protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -3

Query: 674 SKQTVPPQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYSITILQDSRRSALVP*E 498
           S QT P   GN  Q    PRH  R+R  +S SP  L   +  S+     +R   L P E
Sbjct: 26  SHQTTPKSSGNPRQQQAQPRH--RQRKAQSSSPASLAAFASSSVCSSPSARNVPLPPVE 82


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 350  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 171
            G+ S+  K RH G S S   +  HH H+   +    LAT  +    +   +P + +P  L
Sbjct: 944  GRASSEKKKRHVGGSSS--SSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPL 1001

Query: 170  SGS 162
            S S
Sbjct: 1002 SSS 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,196
Number of Sequences: 27780
Number of extensions: 359127
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)