Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F21
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   135   8e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   131   1e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        27   3.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  135 bits (326), Expect = 8e-33
 Identities = 64/99 (64%), Positives = 74/99 (74%)
 Frame = -3

Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
           PG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTN 166

Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
            K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 167 NKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/48 (66%), Positives = 35/48 (72%)
 Frame = -2

Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFT 667
           K  LAAR +  IENP DV V S+R +G RAVLKF AHTG T IAGRFT
Sbjct: 59  KLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  131 bits (317), Expect = 1e-31
 Identities = 63/99 (63%), Positives = 73/99 (73%)
 Frame = -3

Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
           PG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167

Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
            K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 168 NKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 34/48 (70%), Positives = 36/48 (75%)
 Frame = -2

Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFT 667
           K  LAAR +  IENP DV V SSRP+G RAVLKF AHTG T IAGRFT
Sbjct: 60  KLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 623 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 443 AR 438
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 351 LQGSRLEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 494
           L G+R+ +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,968
Number of Sequences: 5004
Number of extensions: 55919
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)