Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F21
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 138 7e-33
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 138 7e-33
01_06_0867 - 32586254-32586574,32586756-32587172 31 1.1
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.4
06_03_0543 + 21967787-21970261 29 5.9
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.8
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 28 7.8
01_05_0535 - 23001864-23005052 28 7.8
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 138 bits (333), Expect = 7e-33
Identities = 60/99 (60%), Positives = 75/99 (75%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
K SIG ++WLLAR VL++RG + +WDV+VDLFF
Sbjct: 169 NKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/52 (61%), Positives = 37/52 (71%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K LAAR +VAIENP D+ V S+RP+GQRAVLKF +TG IAGR T F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 138 bits (333), Expect = 7e-33
Identities = 60/99 (60%), Positives = 76/99 (76%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
K +SIG ++WLLAR VL++RG + +WDV+VDLFF
Sbjct: 169 NKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/52 (61%), Positives = 37/52 (71%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K LAAR +VAIENP D+ V S+RP+GQRAVLKF +TG IAGR T F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 336 HPFHFLQG--SRLEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 506
H LQG S LE Q+ + AL + T PQHF QP H + + ++ V +D
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197
Query: 507 H 509
H
Sbjct: 198 H 198
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 365 VRRTNQPQHPSAGHGEAHHEA-STLHVPTTTTSNQ 466
V R NQP +A + HEA L VP+ + NQ
Sbjct: 86 VERANQPNSKNANEKQQEHEAQGALQVPSMNSLNQ 120
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -3
Query: 512 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF*P*XLKKV---- 345
FV + C+ GL ++ E++ G+LPR + + V+DL L K+
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847
Query: 344 KRMNNKPRNRLW 309
KRM KP +W
Sbjct: 848 KRMPMKPNTLIW 859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,764
Number of Sequences: 37544
Number of extensions: 403888
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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