Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F21
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 167 1e-41
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.040
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.5
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.6
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.6
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.6
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 28 8.0
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 8.0
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 167 bits (405), Expect = 1e-41
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQIQAAFREPRLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN
Sbjct: 105 PGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCN 164
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
K HSIGLM+WLLAREVLR+RG + R W+++ DL+F
Sbjct: 165 NKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYF 203
Score = 72.1 bits (169), Expect = 5e-13
Identities = 33/52 (63%), Positives = 39/52 (75%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K LAAR +V IENP DV V S+RP+GQRA+LK+ +HTG T IAGRFT F
Sbjct: 57 KLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTF 108
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.040
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 376 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 543
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 544 ITGMLTY 564
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 639 SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 493
SCI S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 875 SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 605 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 510
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 473 HSIGLMWWLLAREVLRLRGVLP 408
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 361 HG*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESV 531
H N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 2 HRGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESK 61
Query: 532 LHKAITG 552
+TG
Sbjct: 62 YEFTLTG 68
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 196 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 95
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 624 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 499
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 371 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 490
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 415 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 537
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 629 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 480
RE R +++ +D A H P + +Y NI +I L NT S + +D I N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 360 SRLEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 512
S + Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 240 SSVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,543,012
Number of Sequences: 59808
Number of extensions: 470507
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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