Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F21
(823 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 146 2e-35
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 140 8e-34
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 132 3e-31
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.40
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.2
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 29 3.7
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.9
At2g34150.1 68415.m04180 expressed protein 29 4.9
At2g07020.1 68415.m00803 protein kinase family protein contains ... 28 8.6
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 146 bits (353), Expect = 2e-35
Identities = 63/99 (63%), Positives = 77/99 (77%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP+IA C+TDSP+RFVDI IP N
Sbjct: 109 PGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPAN 168
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
K HSIG ++WLLAR VL++RG + Q+WDV+VDLFF
Sbjct: 169 NKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFF 207
Score = 65.3 bits (152), Expect = 5e-11
Identities = 31/52 (59%), Positives = 37/52 (71%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K +AAR +VAIENP D+ V S+RP+GQRAVLKF +TG IAGR T F
Sbjct: 61 KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTF 112
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 140 bits (340), Expect = 8e-34
Identities = 62/99 (62%), Positives = 75/99 (75%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N
Sbjct: 110 PGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPAN 169
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
K HSIG ++WLLAR VL++RG + Q+WDV+VDLFF
Sbjct: 170 NKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFF 208
Score = 65.3 bits (152), Expect = 5e-11
Identities = 31/52 (59%), Positives = 37/52 (71%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K +AAR +VAIENP D+ V S+RP+GQRAVLKF +TG IAGR T F
Sbjct: 62 KLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTF 113
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 132 bits (319), Expect = 3e-31
Identities = 58/96 (60%), Positives = 72/96 (75%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 486
PG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N
Sbjct: 110 PGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPAN 169
Query: 485 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 378
K HSIG ++WLLAR VL++RG + Q+WDV+V+
Sbjct: 170 NKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
Score = 65.3 bits (152), Expect = 5e-11
Identities = 31/52 (59%), Positives = 37/52 (71%)
Frame = -2
Query: 810 KXFLAARAVVAIENPXDVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFTXRCF 655
K +AAR +VAIENP D+ V S+RP+GQRAVLKF +TG IAGR T F
Sbjct: 62 KLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTF 113
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 623 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 474
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 341 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 228
+++++PR+R W QLN K L LS K + L+GLK
Sbjct: 54 KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 677 DVSXPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFV 507
++S A +PR+ + P+ DH+ IT AS N PV L + +R V
Sbjct: 254 EISQEDALVRPFFRTITQPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQV 312
Query: 506 DIAIPCNTKSS 474
D+ I C+ +S+
Sbjct: 313 DLKILCSNESA 323
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 527 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 390
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 495 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 665
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 665 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 567
P TNQ++ A E +LDP PI EA
Sbjct: 621 PMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,453
Number of Sequences: 28952
Number of extensions: 311889
Number of successful extensions: 704
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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