Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F19
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.5  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.5  
At3g53440.2 68416.m05898 expressed protein                             30   2.0  
At3g53440.1 68416.m05897 expressed protein                             30   2.0  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.4  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.5  
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    28   6.0  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 530 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 354
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 353 SLAESGKD 330
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 115 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 288
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +1

Query: 112 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 291
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 292 LEPPDSRGSTVSIS 333
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +1

Query: 112 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 291
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 292 LEPPDSRGSTVSIS 333
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +1

Query: 49  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 228
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 229 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 348
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +1

Query: 106 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 285
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 286 HCLEPPDSRGSTVS 327
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
 Frame = -3

Query: 539 GG*TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAG--GAKLPSAGLCLNAS 366
           GG +V      TLL   R +  T   +R  S  H +  L   +G  G + P     L+ +
Sbjct: 75  GGSSVEESPELTLLKRNRLEKKTTVVKRLASVSHELKRLTSVSGGIGGRKPPRPAKLDRT 134

Query: 365 KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFF 195
           K+ AS A  G   ++     +G S      ++++ +      R+ FG    M S  F
Sbjct: 135 KSAASQALKGLKFISKTDGGAGWSAVEKRFNQITATTGGLLLRTKFGECIGMTSKDF 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,430
Number of Sequences: 28952
Number of extensions: 372601
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)