BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_F15 (826 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g54020.2 68414.m06155 myrosinase-associated protein, putative... 31 0.93 At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 30 1.6 At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 1.6 At3g53440.2 68416.m05898 expressed protein 30 2.1 At3g53440.1 68416.m05897 expressed protein 30 2.1 At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 29 3.7 At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 5.0 At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 5.0 At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138... 28 8.7 >At1g54020.2 68414.m06155 myrosinase-associated protein, putative strong similarity to myrosinase-associated proteins GI:1769968, GI:1769970, GI:1216389,GI:1216391 from [Brassica napus]; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family Length = 372 Score = 31.1 bits (67), Expect = 0.93 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 652 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 545 + C S + + LL P + L I+ QN P+VGLFT Sbjct: 1 MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36 >At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7 (SPL7) identical to squamosa promoter binding protein-like 7 [Arabidopsis thaliana] GI:5931635; contains Pfam profile PF03110: SBP domain Length = 775 Score = 30.3 bits (65), Expect = 1.6 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -3 Query: 515 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 339 T+V+++ L+ C CD + N +H ++ +K P AGL C +A+ Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691 Query: 338 SLAESGKD 315 S GK+ Sbjct: 692 SPDSGGKE 699 >At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing protein / MATH domain-containing protein Length = 564 Score = 30.3 bits (65), Expect = 1.6 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +1 Query: 100 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 273 K S + +PR R LY D + + + K+T S+D+ NG + S+ E R+ + H Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196 >At3g53440.2 68416.m05898 expressed protein Length = 512 Score = 29.9 bits (64), Expect = 2.1 Identities = 23/74 (31%), Positives = 34/74 (45%) Frame = +1 Query: 97 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 276 RKS+ +P R+ L++RD++VK + D +P RR RLV S Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63 Query: 277 LEPPDSRGSTVSIS 318 DSR ++IS Sbjct: 64 SPIEDSRSKKLNIS 77 >At3g53440.1 68416.m05897 expressed protein Length = 512 Score = 29.9 bits (64), Expect = 2.1 Identities = 23/74 (31%), Positives = 34/74 (45%) Frame = +1 Query: 97 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 276 RKS+ +P R+ L++RD++VK + D +P RR RLV S Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63 Query: 277 LEPPDSRGSTVSIS 318 DSR ++IS Sbjct: 64 SPIEDSRSKKLNIS 77 >At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596: DNA repair protein (rad1); almost identical to 5' repair endonuclease (GI:8926611) [Arabidopsis thaliana] Length = 956 Score = 29.1 bits (62), Expect = 3.7 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Frame = +1 Query: 34 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 213 G S+ R +H+A + + + ++ +TD + + E + D S KK DP Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544 Query: 214 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 333 LRR + +T K L P++ + + S S P A Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586 >At5g65770.1 68418.m08276 nuclear matrix constituent protein-related low similarity to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI:2190187 Length = 1042 Score = 28.7 bits (61), Expect = 5.0 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +1 Query: 91 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 270 +E K+S D S+ H E + S A KK+ +S+ +D + +S E +++ Sbjct: 95 EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152 Query: 271 HCLEPPDSRGSTVS 312 C E S GST+S Sbjct: 153 ECAETKVSAGSTMS 166 >At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein beta-ketoacyl-CoA synthase - Simmondsia chinensis,PID:g1045614 Length = 451 Score = 28.7 bits (61), Expect = 5.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 777 RAKAGLIQMFSTHRDCESTAYRSFSIK 697 RAK L+Q+ TH+ E T+Y+S ++ Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317 >At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'growth regulator protein -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497. Length = 568 Score = 27.9 bits (59), Expect = 8.7 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +3 Query: 594 ADIEGSKSNVAMNAWLPQAS---YPLVVTFLAPLAKNS 698 AD+ GS NV M AW P+ P + T ++ NS Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVWKPCISTNVSAAGSNS 159 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,254,552 Number of Sequences: 28952 Number of extensions: 389188 Number of successful extensions: 988 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 988 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1892353600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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