Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F14
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 32 0.083
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.33
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 28 1.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.8
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 27 3.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 4.1
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 26 5.4
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 26 5.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 5.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 7.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 7.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.5
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.5
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 32.3 bits (70), Expect = 0.083
Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Frame = -2
Query: 634 DSFAKEQVSFSGSKS--LNREPVKIDTRPVSVTSTSNKTELVGAPKRMTVAELFLK---- 473
++ ++EQ+ S +KS L EP + T T GA AE+ K
Sbjct: 347 ETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAK 406
Query: 472 --ESEQNKNEGVQVTETINKFD---KIDLYKSIFLSDSE--DEDVGQTK----------- 347
+SE N E V E D K L+K + D++ +ED G+T+
Sbjct: 407 NADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSI 466
Query: 346 -NNDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKV 170
ND+D K E A++ E +S + DK E+K D + DKV
Sbjct: 467 EANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDK---EEK---TDSKETADKV 520
Query: 169 ENVPAPDETYGPKIPDNFKPN-LASQTCKQDVTLEIDSSS 53
E + D P DN + N A + +DV +I+ ++
Sbjct: 521 EQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAA 560
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 142 YGPKIPDNFKPNLASQTCKQDVTL---EIDSSSSS 47
Y P IP NF PN++ T + V L +DS SS
Sbjct: 1004 YAPSIPPNFNPNVSIDTMTEGVALPSATLDSDKSS 1038
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 27.9 bits (59), Expect = 1.8
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Frame = -2
Query: 487 ELFLKESEQNKNEGVQVTETINK-FD-KIDLY--KSI-FLSDSEDEDVGQTKNNDRDFAD 323
E+FL++S++N +++ E I K FD + Y SI F +D+ + + K+ D +
Sbjct: 31 EVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDASQRVIWRDKSLGEDDFE 90
Query: 322 APKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDET 143
++ + + S +G ++ + N + + D QT++ N P P+ +
Sbjct: 91 GMRSEKASGSSVQGCQRVLEKGKRNPESATNVAIFVNVITLIDFQTDIVISVNAPLPNTS 150
Query: 142 YGPKIPDNFKPN 107
P +N P+
Sbjct: 151 SVPSSVENIPPS 162
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 NSPPRGIFANIDFHEINSWKRPD--KDVHEQKPKDAD 194
N RGIFA D ++ SW PD +VH +K ++
Sbjct: 2518 NGQARGIFAGDDKGQVFSWMLPDTTSNVHLEKDNTSE 2554
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 220 HEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNFKPNLASQTC 89
H + +A + D V N+ + ET GP+I D K + TC
Sbjct: 144 HAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFTC 187
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 396 LYKSILSNLFIVSVTWTPSFLFCSDSFKN 482
L + I LF ++ WTPSF +F+N
Sbjct: 654 LEQLIFQALFSFAINWTPSFFLNHSNFEN 682
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -2
Query: 631 SFAKEQVSFSGSKSLNREPVKIDTRPVSVTSTSNKTELVGAPKRMTVAELFLKESEQNKN 452
S+ + V S +K L R ++ + SN+ + PK + V + F+ E EQN
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELK----EIHGVSNEKAVNLGPKFLQVIQKFIDEKEQNL- 1196
Query: 451 EGVQVTETINKFD 413
EG ++ ++ D
Sbjct: 1197 EGTELDPSLQSLD 1209
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 280 IFANID---FHEINS--WKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNF 116
IF+ +D FH+ S K D +H+ +DA G + E++PAP P+ +F
Sbjct: 396 IFSEVDRIAFHKFLSENTKPEDSSIHKHS-RDASGDSTKGFAEHMPAPARRRRPQSTASF 454
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 528 LFDVDVTETGLVSILTGSRFSDFDPLNETCSF 623
+ D +TE G + TG+ F+ P+ E +F
Sbjct: 87 VIDTPITEMGFTGLATGAAFAGLRPICEFMTF 118
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 469 SEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFAD 323
S N+N+ + IN D+ D SDSE+ED + ++DR FA+
Sbjct: 783 SRGNENKYPRSNFFINGSDREDF------SDSEEEDGNDSSDDDRGFAE 825
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 175 YRLPFDRPHLWAFV 216
YR+ FD PHLWAF+
Sbjct: 1122 YRI-FDSPHLWAFL 1134
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 622 KEQVSFSGSKSLNREPVKIDTRPVSVTSTSNKTELVG 512
+E SFS K L P+ T PVS+ T + + G
Sbjct: 135 EEDGSFSDLKDLYSNPMPAQTTPVSMRMTKRQRAIQG 171
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = -2
Query: 490 AELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFADAPKN 311
A+ F++E E++ +E ++++ I+ ++ L + DV ++D DF+D P++
Sbjct: 201 AQPFVEEGEKDYDEAAAAKAGKSEWE-IE-FEKFKLEQKKQPDVA---SSDGDFSDEPES 255
Query: 310 LERNNSP 290
ER+ P
Sbjct: 256 EERDEVP 262
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 223 VHEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNFK 113
+H K + D D + +P PD YG K +FK
Sbjct: 1793 IHNTKTDELDITLLSDILSQLPCPDAYYGIKRETSFK 1829
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 259 HEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETY 140
H +N + PD D KP+D + K N+ DE Y
Sbjct: 212 HPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELY 251
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 9.5
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 405 SILSNLFIVSVTWTP--SFLFCSDSFKNNSATVILLGAPTSSVLFDVDVTETGLVSILTG 578
++ SN F +P SF ++SF NN + GAPT+S F + + +
Sbjct: 172 TVTSNQFNKPTQNSPFNSFSNNNNSFNNNQQANDIFGAPTTSA-FTSQLNASPFSQNTSS 230
Query: 579 SRFSDFDPL-NETCSFAKLS 635
+ F+ +P+ N SF S
Sbjct: 231 NSFTGSNPVQNNPSSFGSSS 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,103
Number of Sequences: 5004
Number of extensions: 64708
Number of successful extensions: 259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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