SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F14
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    32   0.61 
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572...    29   3.3  
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    29   3.3  
08_02_0874 - 22102158-22102333,22102354-22102498                       29   4.3  
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543...    29   5.7  
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248...    28   7.5  
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558...    28   9.9  
07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630...    28   9.9  
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    28   9.9  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    28   9.9  

>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = -2

Query: 736 PNPVARIQKENIQERPEDXXLRLFVTWSLQYTXRDSFAKEQVSFSGSKSLNREPVKIDTR 557
           P+P        ++ER ED  L+    + +     DS      +   SK     P K+DTR
Sbjct: 479 PHPTVVSLPSAVEERDEDLQLQYDTKFGVDGMEVDSRPHLPPTTKRSKRAKSSPPKLDTR 538

Query: 556 PVSVTSTSNKTELVGAPKRMTVAE 485
             +V +   K ++  APK++ + +
Sbjct: 539 RKAVGTGRGKGKVPLAPKKLDLGK 562


>02_05_0626 -
           30456714-30456829,30456951-30457023,30457136-30457250,
           30457368-30457450,30457532-30457685,30457859-30458095,
           30458212-30458435,30458657-30458774,30459286-30459614
          Length = 482

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 206 GLLFVNIFIGSLPRVYFVEIDISENTT 286
           G  + +IF+G+ PR YF+++D   + T
Sbjct: 110 GQYYTSIFVGNPPRPYFLDVDTGSDLT 136


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 152 GSRNILDF-IDFRLTVRIFGLLFVNIFIGSLPRVYFVEID 268
           G   ++DF ++      + GL F  + +GS P+ YFV+ID
Sbjct: 70  GVAGVVDFPVEGSANPFMVGLYFTRVKLGSPPKEYFVQID 109


>08_02_0874 - 22102158-22102333,22102354-22102498
          Length = 106

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 604 SGSKSLNREPVKIDTRPVSVTSTSNKTELVG-APKRMTV 491
           SGS S  +  V +D  P  +TS   K ELVG  P R+ V
Sbjct: 2   SGSTSPKKRHVHLDALPSCMTSVVAKGELVGEVPNRLAV 40


>05_01_0608 +
           5429901-5429982,5430610-5431058,5436758-5437183,
           5437270-5437643,5437655-5438113,5438191-5438361,
           5438442-5438760
          Length = 759

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = -2

Query: 736 PNPVARIQKENIQERPEDXXLRLFVTWSLQYTXRDSFAKEQVSFSGSKSLNREPVKIDTR 557
           P+P        +++R ED  L+    W  +Y  R   A    +    ++ +  P K+DTR
Sbjct: 423 PHPTVVSLPPAVEQRDEDLQLQF---WGGRYGGRQQAAPPPPAKRSKRAKSSLP-KLDTR 478

Query: 556 PVSVTSTSNKTELVGAPKRMTVAE 485
             +V +   K ++  APK++ + +
Sbjct: 479 RKAVGTGRGKVKVPLAPKKLDLGK 502


>01_06_1654 -
           38924090-38924101,38924183-38924215,38924737-38924829,
           38924909-38924965,38925048-38925143,38925237-38925304,
           38925429-38925486,38925572-38925658,38925935-38925982,
           38926060-38926116,38926200-38926458,38926666-38926858,
           38926991-38927098,38927849-38927957
          Length = 425

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 238 RPDKDVHEQKPKDADGQTEVDKVENV-PAPDETYGPKIPD 122
           R  KDVH +KPKD D +  ++  + V P   ++   +IPD
Sbjct: 214 RKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPD 253


>08_01_1000 +
           10154024-10154147,10155500-10155761,10155839-10155885,
           10155967-10155998,10156079-10156146,10156214-10156605,
           10156811-10157009,10157494-10157636,10157722-10158366,
           10158493-10158551,10158725-10158823
          Length = 689

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 253 INSWKRPDKDVHEQKPKDADGQTE 182
           +N+  +P+  ++ Q P++ADGQ E
Sbjct: 506 VNAEAQPESQINPQSPRNADGQPE 529


>07_03_1125 -
           24162298-24162586,24162730-24162783,24162940-24163035,
           24163149-24163190,24163688-24163756,24164262-24164284
          Length = 190

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 613 LVLSRSCLXSCTE---DSMLRKDGVXNLRVALECFPS 714
           L++  +CL S  +   DS++RK  +  LR++L+ FPS
Sbjct: 117 LLIVLTCLASSHQVDKDSLVRKQALYILRISLDIFPS 153


>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
            16611409-16611690,16611811-16612294,16612791-16612929,
            16613138-16613243,16613396-16613562,16613632-16613707,
            16614173-16614321,16614813-16614874,16615232-16615335,
            16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = -2

Query: 544  TSTSNKTELVG-APKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSED 368
            T+ +N+ E    AP+  +VA     E++    +    + ++ +   +DLYK+IF SD  D
Sbjct: 691  TTRTNEVESSSIAPQHTSVAGATETEAKGAATDPEIESSSVQR--PVDLYKAIF-SDDSD 747

Query: 367  EDVGQTKNNDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKP 206
            +D+ +   N     D  K  E  N     + A  DF E +  K    DV  +KP
Sbjct: 748  DDMAEPLANQP--VDPVKTSEDANMVLNRLVAE-DFLE-SLGKELGLDVPPEKP 797


>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
            20686779-20688206
          Length = 1074

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 24/127 (18%), Positives = 59/127 (46%)
 Frame = -2

Query: 523  ELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKN 344
            E++G    +   E+  K+ +  K+E ++     ++ D ++L   I     ++++    + 
Sbjct: 922  EILGMMNNLHYVEVVYKDPKVMKSEKIK-----HQTDNVELQPHII----KEKEKKVKEE 972

Query: 343  NDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVEN 164
             ++  A+  KN+   +S        +D H +  WK+  K+  ++K K+ + +   +  +N
Sbjct: 973  EEKCMAEIKKNMRIPDS-------TLDEHGV--WKKDQKEADQKKAKEEEEKHMAEIKKN 1023

Query: 163  VPAPDET 143
            +  PD T
Sbjct: 1024 MGIPDST 1030


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,973
Number of Sequences: 37544
Number of extensions: 403469
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -