Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F13
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.7  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   3.6  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   3.6  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   8.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 727 SRPYASSXPPLRXRXHQPDHQIPRFH-TPTTPDLTSISINPLTP 599
           S P + +   L+     P  Q  RF+ TP  P   + + NPLTP
Sbjct: 66  SSPSSDTSQDLQHSYQSPQTQPARFYSTPIVPHF-AYNHNPLTP 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 96  RKKHGEDLPTGGRSRRKGEKLE*MQREEQFCCP*EP 203
           ++K  +D   GG S +K      + ++ Q+C P  P
Sbjct: 557 KRKRKQDPADGGNSMKKCRARYGLDQQNQWCKPCRP 592


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 96  RKKHGEDLPTGGRSRRKGEKLE*MQREEQFCCP*EP 203
           ++K  +D   GG S +K      + ++ Q+C P  P
Sbjct: 449 KRKRKQDPADGGNSMKKCRARYGLDQQNQWCKPCRP 484


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 454 GAKLVIHHSLENK 492
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 454 GAKLVIHHSLENK 492
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 529 PSSLGMXKGVSPPYFQVNDESQASRLIS 446
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 21  PNSVGVSNEVSLPQFKVLGHRQRAMEIS 48


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 616 WKWMLSLGWLVYGIG 660
           +KW+  L W  YG G
Sbjct: 585 FKWLSFLSWFRYGNG 599


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 616 WKWMLSLGWLVYGIG 660
           +KW+  L W  YG G
Sbjct: 585 FKWLSFLSWFRYGNG 599


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,307
Number of Sequences: 336
Number of extensions: 3528
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)