Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F11
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 205 4e-53
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 202 3e-52
07_03_1608 - 28125301-28126063,28127030-28127139,28127222-281277... 31 1.1
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.9
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 3.3
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.8
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 5.8
06_03_0543 + 21967787-21970261 29 5.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 205 bits (500), Expect = 4e-53
Identities = 92/150 (61%), Positives = 117/150 (78%)
Frame = -3
Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
HQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG +
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTIL 194
Query: 405 RDQRWDVVVDLFFYRDPEESEKGEQQAKEQ 316
+WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 202 bits (493), Expect = 3e-52
Identities = 90/146 (61%), Positives = 114/146 (78%)
Frame = -3
Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
HQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG +
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTIL 194
Query: 405 RDQRWDVVVDLFFYRDPEESEKGEQQ 328
+WDV+VDLFFYRDPEE+++ E++
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEE 220
>07_03_1608 -
28125301-28126063,28127030-28127139,28127222-28127716,
28127797-28128000
Length = 523
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 665 VKRPAIXVAPVCAANFSTAR*PXGRDEMTNTSAGXXXGYDSTSSQNK 805
V+R +AP FS AR GRDE++ G GY + +NK
Sbjct: 20 VRRENAWIAPA-RVGFSQARRGGGRDELSAAGLGRFLGYATADHKNK 65
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 229 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 143
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 207 VQQAGRYPQPMKPLAPVFHSSLHGQ 281
V+++ RYP P +PLAP+ S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 709 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 602
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 165 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 254
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 429 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKGEQQ 328
+RL V R + +D+ +L YR PE+ GEQ+
Sbjct: 135 VRLGEVSHRRKAYDICANLNSYRPPEQDNGGEQE 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,417,134
Number of Sequences: 37544
Number of extensions: 420626
Number of successful extensions: 1162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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