Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F11
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   207   8e-54
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   204   7e-53
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   177   5e-45
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.39 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.8  
At2g34150.1 68415.m04180 expressed protein                             29   4.8  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   8.4  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  207 bits (505), Expect = 8e-54
 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
 Frame = -3

Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586
           P D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
           HQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG + 
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIA 194

Query: 405 RDQRWDVVVDLFFYRDPEESE-KGEQQAKEQ 316
             Q+WDV+VDLFFYR+PEE++ + E +A  Q
Sbjct: 195 AGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  204 bits (497), Expect = 7e-53
 Identities = 92/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
 Frame = -3

Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
           HQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG + 
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195

Query: 405 RDQRWDVVVDLFFYRDPEES-EKGEQQAKEQ 316
             Q+WDV+VDLFFYR+PEE+ ++G+++A+ Q
Sbjct: 196 AAQKWDVMVDLFFYREPEEAKQEGDEEAEVQ 226


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  177 bits (432), Expect = 5e-45
 Identities = 80/130 (61%), Positives = 98/130 (75%)
 Frame = -3

Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
           HQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG + 
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195

Query: 405 RDQRWDVVVD 376
             Q+WDV+V+
Sbjct: 196 AAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 472
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 666 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 565
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 493 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 663
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 339 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 461
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,593
Number of Sequences: 28952
Number of extensions: 323508
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)