BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_F11 (806 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 207 8e-54 At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 204 7e-53 At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 177 5e-45 At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.39 At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.1 At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.8 At2g34150.1 68415.m04180 expressed protein 29 4.8 At1g72710.1 68414.m08408 casein kinase, putative similar to case... 28 8.4 >At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379 Length = 298 Score = 207 bits (505), Expect = 8e-54 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Frame = -3 Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586 P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134 Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406 HQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIA 194 Query: 405 RDQRWDVVVDLFFYRDPEESE-KGEQQAKEQ 316 Q+WDV+VDLFFYR+PEE++ + E +A Q Sbjct: 195 AGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225 >At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 280 Score = 204 bits (497), Expect = 7e-53 Identities = 92/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Frame = -3 Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586 P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135 Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406 HQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195 Query: 405 RDQRWDVVVDLFFYRDPEES-EKGEQQAKEQ 316 Q+WDV+VDLFFYR+PEE+ ++G+++A+ Q Sbjct: 196 AAQKWDVMVDLFFYREPEEAKQEGDEEAEVQ 226 >At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 332 Score = 177 bits (432), Expect = 5e-45 Identities = 80/130 (61%), Positives = 98/130 (75%) Frame = -3 Query: 765 PADVFVISSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 586 P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135 Query: 585 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406 HQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195 Query: 405 RDQRWDVVVD 376 Q+WDV+V+ Sbjct: 196 AAQKWDVMVN 205 >At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2) identical to SP|Q9GCB9 Mitochondrial ribosomal protein S2 {Arabidopsis thaliana}; contains Pfam profile PF00318: ribosomal protein S2 Length = 219 Score = 32.3 bits (70), Expect = 0.39 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 472 P ++V D + I EAS + IPV+A+ + + PL F + I P + S Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181 >At2g07020.1 68415.m00803 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 700 Score = 29.9 bits (64), Expect = 2.1 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -3 Query: 666 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 565 TP TNQ++ A E +LDP PI EA Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653 >At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family Length = 146 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -3 Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388 D L ++A+ C TKS + + ++ V + +P +RWD Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94 >At2g34150.1 68415.m04180 expressed protein Length = 700 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 493 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 663 D +H+ W S + FSN L + +Q +QE+ E S D S TW Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363 >At1g72710.1 68414.m08408 casein kinase, putative similar to casein kinase I, delta isoform [Arabidopsis thaliana] SWISS-PROT:P42158 Length = 465 Score = 27.9 bits (59), Expect = 8.4 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 339 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 461 P +FL G GRR NQ G + + +++ H+P N Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,008,593 Number of Sequences: 28952 Number of extensions: 323508 Number of successful extensions: 823 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 823 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1833827200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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