Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F06
(808 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 267 2e-70
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 257 3e-67
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 233 4e-60
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 208 1e-52
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 184 2e-45
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 159 6e-38
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 145 1e-33
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 113 5e-24
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 85 2e-15
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 83 6e-15
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 79 1e-13
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 79 2e-13
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 75 2e-12
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 75 3e-12
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 71 3e-11
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 68 3e-10
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 67 4e-10
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 65 2e-09
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 64 3e-09
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 58 3e-07
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 55 2e-06
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 55 2e-06
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 50 5e-05
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 48 4e-04
UniRef50_Q8TB36 Cluster: Ganglioside-induced differentiation-ass... 36 1.2
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:... 35 2.8
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 6.4
UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative; ... 33 8.5
UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3; ce... 33 8.5
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 267 bits (655), Expect = 2e-70
Identities = 122/163 (74%), Positives = 142/163 (87%)
Frame = -2
Query: 588 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 409
+ P + +GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGK 297
Query: 408 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 229
+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G KKR++TLRKSL V TKR
Sbjct: 298 LIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKR 357
Query: 228 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 358 RALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = -3
Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTPR 561
GT+ +K+ WARE LE+ +PV+ VF QDEMID IGVT+G+ + S H + P T R
Sbjct: 188 GTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGV-TSRWHTKKLPRKTHR 246
Query: 560 VLGKLPAL 537
L K+ +
Sbjct: 247 GLRKVACI 254
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 257 bits (629), Expect = 3e-67
Identities = 130/235 (55%), Positives = 157/235 (66%)
Frame = -2
Query: 807 HTQMKLLXXDKXRXHIMESNLXGYHRGQSEMGQRTSGETYPCRFCVCPR*ND*LHWCHPR 628
HTQMKLL + + HIME L G + + E V + +
Sbjct: 165 HTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTK 224
Query: 627 XKDTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 448
+ K + P + KGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI
Sbjct: 225 GRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKI 284
Query: 447 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 268
+RIG+G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G KKR+
Sbjct: 285 FRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 267 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 103
ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 345 ITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = -3
Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTPR 561
GT+ +KV WA+ LEK +PV SVF+Q E+ID I VT+G+ ++ S H + P T +
Sbjct: 188 GTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGV-TSRWHTKKLPRKTHK 246
Query: 560 VLGKLPAL 537
L K+ +
Sbjct: 247 GLRKVACI 254
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 233 bits (570), Expect = 4e-60
Identities = 109/162 (67%), Positives = 131/162 (80%)
Frame = -2
Query: 588 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 409
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 249
Query: 408 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 229
NN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 250 ---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKR 306
Query: 228 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 103
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 307 VAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 49.6 bits (113), Expect = 9e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -1
Query: 622 GYKGVTSRWHTKKLPRKTHQG 560
G+KGVTSRWHTKKLPRKTH+G
Sbjct: 179 GFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 208 bits (508), Expect = 1e-52
Identities = 97/160 (60%), Positives = 119/160 (74%)
Frame = -2
Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
P + +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP----- 349
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 39.5 bits (88), Expect = 0.097
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -3
Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 627
GTI K++ A+ LEK + +DSVF Q E D VT+G
Sbjct: 242 GTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKG 279
Score = 33.1 bits (72), Expect = 8.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
K G+ GV RW LPRKTH+G
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRG 301
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 184 bits (448), Expect = 2e-45
Identities = 94/167 (56%), Positives = 118/167 (70%)
Frame = -2
Query: 600 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 421
V QR+ P R +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLI 271
Query: 420 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 241
KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + KK +T+ K L V
Sbjct: 272 KDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKH-LTICKYLLV 330
Query: 240 HTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 100
T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 331 QTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 159 bits (387), Expect = 6e-38
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -2
Query: 507 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 328
+VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAST+Y KSI+P+GG H G
Sbjct: 214 SVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCG 269
Query: 327 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 148
+V NDFVM+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +
Sbjct: 270 KVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGE 329
Query: 147 KAAFMGTLKKD 115
K FMG LKKD
Sbjct: 330 KKGFMGPLKKD 340
Score = 42.7 bits (96), Expect = 0.010
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -1
Query: 664 KMK*LTALVSPKXKGYKGVTSRWHTKKLPRKTHQGS*ESCLHW 536
+++ L + + K K YKG++S W+TKK+P KTHQ E+ W
Sbjct: 168 RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACIW 210
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 145 bits (352), Expect = 1e-33
Identities = 74/149 (49%), Positives = 100/149 (67%)
Frame = -2
Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYS 279
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
N+ S D KS+ MGGF +G +NND+++IKG G KR I LRK+++
Sbjct: 280 NSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVIT 336
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFM 133
EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 337 EKIILKYVDTSSKRGHGRYESSADKFSKM 365
Score = 37.1 bits (82), Expect = 0.52
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -1
Query: 652 LTALVSPKXKGYKGVTSRWHTKKLPRKTHQG 560
+ A+ K G KGV SRW +LPRKTH+G
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 414 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 235
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 234 KRAALEK 214
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 113 bits (272), Expect = 5e-24
Identities = 58/131 (44%), Positives = 84/131 (64%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+ +KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K +
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLD 298
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 214
+TE + ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++
Sbjct: 299 ENTEIE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 353
Query: 213 INLKFIDTSSK 181
+ ++ SK
Sbjct: 354 PQITYVSVESK 364
Score = 33.1 bits (72), Expect = 8.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 737 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQ 615
++E+K + +E L K + V V + E++D I VT+G+ Q
Sbjct: 191 SVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQ 231
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -2
Query: 288 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 109
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 108 REE 100
+E
Sbjct: 148 AKE 150
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 85.0 bits (201), Expect = 2e-15
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = -2
Query: 564 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 388
KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG NN
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD 273
Query: 387 TEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKIN 208
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++
Sbjct: 274 --------EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPE 323
Query: 207 LKFIDTSSKFG 175
+ +I T+SK G
Sbjct: 324 ITYISTTSKQG 334
Score = 39.1 bits (87), Expect = 0.13
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -3
Query: 734 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQ 615
IE+++ +A+E L K + + VF + E++D IGVT+G+ Q
Sbjct: 169 IEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQ 208
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 83.4 bits (197), Expect = 6e-15
Identities = 50/142 (35%), Positives = 75/142 (52%)
Frame = -2
Query: 600 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 421
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 420 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 241
D +E+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR- 316
Query: 240 HTKRAALEKINLKFIDTSSKFG 175
K + + ++ T SK G
Sbjct: 317 -PKNMPKQAPEITYLSTQSKMG 337
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 79.4 bits (187), Expect = 1e-13
Identities = 46/133 (34%), Positives = 71/133 (53%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRISNP------------ 294
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 214
E +TP GGF HYGEV N +++++G GP KR++ R +R HT +
Sbjct: 295 -------GESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFD 344
Query: 213 INLKFIDTSSKFG 175
++L ++ TSSK G
Sbjct: 345 VDLTYVSTSSKQG 357
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 725 KVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
K++WA E L I +D V+ + +D +G+T+G+
Sbjct: 197 KLEWAHERLGGEIGIDDVYEAGKELDVVGITKGK 230
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 78.6 bits (185), Expect = 2e-13
Identities = 48/110 (43%), Positives = 62/110 (56%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
R KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------ 278
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
+ +TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 279 ---------EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 74.9 bits (176), Expect = 2e-12
Identities = 48/133 (36%), Positives = 70/133 (52%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI--------------- 271
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 214
A E E ITP GGF HYGEV N +++I+G GP KR+I R + R R
Sbjct: 272 AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPP 324
Query: 213 INLKFIDTSSKFG 175
+++ ++ T+SK G
Sbjct: 325 VDITYVSTASKQG 337
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 74.5 bits (175), Expect = 3e-12
Identities = 42/127 (33%), Positives = 69/127 (54%)
Frame = -2
Query: 555 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 376
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP--------------- 276
Query: 375 LSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFI 196
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++
Sbjct: 277 ------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYV 328
Query: 195 DTSSKFG 175
T+S G
Sbjct: 329 STASNQG 335
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 70.9 bits (166), Expect = 3e-11
Identities = 46/135 (34%), Positives = 65/135 (48%)
Frame = -2
Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
P ++ K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
+A T I GGF HYG V ND+V++ G GP KR+I +R R K +
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR--QKVPDI 315
Query: 219 EKINLKFIDTSSKFG 175
+ + L +I SK G
Sbjct: 316 DNVKLDYISLESKQG 330
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 67.7 bits (158), Expect = 3e-10
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -2
Query: 564 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 385
KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ +
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVE----------- 266
Query: 384 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 205
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +
Sbjct: 267 ------------GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GI 312
Query: 204 KFIDTSSK 181
++I S K
Sbjct: 313 EYISLSPK 320
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 67.3 bits (157), Expect = 4e-10
Identities = 38/118 (32%), Positives = 60/118 (50%)
Frame = -2
Query: 564 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 385
K +R++ +G P V +TV RAGQ G+H R E NK+I +G G+
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------- 270
Query: 384 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 211
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 -----DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = -2
Query: 564 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 385
K +R+V +G P V +TV RAGQ G+H R E +K+I +G +T
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NT 270
Query: 384 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
+ D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 64.5 bits (150), Expect = 3e-09
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 58.0 bits (134), Expect = 3e-07
Identities = 40/110 (36%), Positives = 54/110 (49%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+H KG RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 288 -------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 55.2 bits (127), Expect = 2e-06
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 397
+H KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 396 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
++ +TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
Score = 38.3 bits (85), Expect = 0.23
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3
Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQ 615
GT+ +++ +A + L + VD VF + + ID IGVT+G+ Q
Sbjct: 228 GTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQ 269
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 54.8 bits (126), Expect = 2e-06
Identities = 45/136 (33%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 397
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 396 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAA 223
+TP GGF YG V + FVM+ G G KR I +R ++R +
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLG 327
Query: 222 LEKINLKFIDTSSKFG 175
+ K + +I +SK G
Sbjct: 328 VRKPEITYISLASKQG 343
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 50.4 bits (115), Expect = 5e-05
Identities = 36/110 (32%), Positives = 51/110 (46%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
+H KG R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------- 296
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 244
I GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 297 -----------INVEGGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 615 LYPLXLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFVLDGT 740
L + GD+N +NHFIL ++R++R+ F ++F GP +FV DGT
Sbjct: 48 LETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGT 89
>UniRef50_Q8TB36 Cluster: Ganglioside-induced
differentiation-associated protein 1; n=37;
Euteleostomi|Rep: Ganglioside-induced
differentiation-associated protein 1 - Homo sapiens
(Human)
Length = 358
Score = 35.9 bits (79), Expect = 1.2
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +1
Query: 466 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK*HLCILXPWVTPM 645
+T +I +L T ER PR MP + +P+ + SL + H CIL P +T +
Sbjct: 90 ATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELT-V 148
Query: 646 QSIISSWANT 675
S+I ++A T
Sbjct: 149 DSMIPAYATT 158
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 248 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 126
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 35.1 bits (77), Expect = 2.1
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 259 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLS 438
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 439 NTIDFLVHFSTVMITFLTST 498
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:
ENSANGP00000012392 - Anopheles gambiae str. PEST
Length = 250
Score = 34.7 bits (76), Expect = 2.8
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = -2
Query: 573 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 394
RHT+ V + P S T +R + RT + +Y G N
Sbjct: 27 RHTQNSLNVPIVVQPAPVSASSTASRYASTAHEQRTGASGPVYYAPAAGASTYGSQYSNT 86
Query: 393 ASTEYDLSEKSITPMGGFPHYGEVNNDF 310
A++ S GGF HY N+DF
Sbjct: 87 AASSSHNSRYKAGSAGGFVHYPIANDDF 114
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 2.8
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 447 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 268
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 267 ITLRKSLR 244
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 465
Score = 34.3 bits (75), Expect = 3.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 526 MPSSNAGNFPKTLGVSYGVASLCANEK*HLCILXPWVT-PMQSIISSWANTESTGI 690
+P+S GN PKTL +Y V EK H L P +T M S +WA G+
Sbjct: 173 IPASIIGNRPKTLVNAYNVFDFLNVEKIHNATLAPLITDEMLSNALTWAEYHEAGV 228
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 6.4
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -2
Query: 489 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 310
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 309 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative;
n=1; Solanum bulbocastanum|Rep: DNA-directed RNA
polymerase, putative - Solanum bulbocastanum (Wild
potato)
Length = 1018
Score = 33.1 bits (72), Expect = 8.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 645 HWCHPRXKDTKVSLLVGT-QRSYPVRHTKGLRK 550
HWCHP + +VS +V T +R+ P++ T LRK
Sbjct: 498 HWCHPYKRMERVSGVVATLRRTNPLQMTADLRK 530
>UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3;
cellular organisms|Rep: Phosphoenolpyruvate synthetase -
Uncultured methanogenic archaeon RC-I
Length = 890
Score = 33.1 bits (72), Expect = 8.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 WCVLRGSFFVCQ-REVTPLYPLXLGDTNAVNHFILGKH 674
WC+ G F+V Q R VT LYP+ D + ++ F+ H
Sbjct: 296 WCLAGGQFYVLQSRPVTSLYPVPRADDSRLHVFVSFGH 333
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.5
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 327 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 202
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,258,022
Number of Sequences: 1657284
Number of extensions: 17062055
Number of successful extensions: 41049
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 39707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41028
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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