Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F06
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   209   4e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   209   4e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.59 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   5.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -2

Query: 597 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 418
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 417 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 238
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 237 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
           G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           + KG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -2

Query: 597 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 418
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 417 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 238
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 237 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
           G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           + KG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 406 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 585
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 586 SLCANEK 606
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 495
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 136 HGYTQEGSYSRRSCGYHNPS 77
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 712 PENIWRNLSLSILCLPKMK*LTALVSPKXK-GYKGVTSRWHTKKLPRKT 569
           PE  W+ +SLS L LPK          K K  Y    SR H  KLP++T
Sbjct: 631 PECRWQKVSLSELVLPK----------KVKIAYMKAVSRVHPDKLPQQT 669


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 358 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 486
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 418 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 543
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,553
Number of Sequences: 5004
Number of extensions: 72012
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)