Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F06
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               150   1e-36
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         140   2e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)                  29   3.4  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.4  
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.7  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  150 bits (363), Expect = 1e-36
 Identities = 83/155 (53%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
 Frame = -2

Query: 807 HTQMKLLXXDKXRXHIMESNLXGYHRGQSEMG--QRTSGETYPCRFCVCPR*ND*LHWCH 634
           HTQ KLL   + + HIME  + G      ++   +       P R    P     +    
Sbjct: 164 HTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVT 223

Query: 633 PRXKDTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNK 454
                  V+   GT++  P +  KGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NK
Sbjct: 224 KGHGFKGVTYRWGTKK-LPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNK 282

Query: 453 KIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 349
           KIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 283 KIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = -3

Query: 734 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 627
           + +KV W RE LE P PV  VF+ DEMID IGVT+G
Sbjct: 190 VAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKG 225



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           K  G+KGVT RW TKKLPRKTH+G
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKG 247


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  140 bits (338), Expect = 2e-33
 Identities = 62/82 (75%), Positives = 70/82 (85%)
 Frame = -2

Query: 348 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 169
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 168 RFQTPADKAAFMGTLKKDRIRE 103
           RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -2

Query: 483 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 349
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
          Length = 1250

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 728 DKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 627
           D++ W   H   P P      Q++  D IGVT G
Sbjct: 213 DEILWLVRHCCNPAPRSRKLTQEDFFDSIGVTAG 246


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 423 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 298
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 34  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 126
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 466 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK 606
           S   I+F  +T Y +RH RR  S N  +F   +    G ++L  N K
Sbjct: 96  SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVGDSALGTNIK 142


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 331 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 492
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 279 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 130
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 166 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 41
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,752,252
Number of Sequences: 59808
Number of extensions: 576219
Number of successful extensions: 1314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)