Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F06
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   212   3e-55
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   212   3e-55
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   210   8e-55
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   3.6  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.6  
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    29   4.8  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    28   6.3  
At3g42770.1 68416.m04468 F-box family protein contains F-box dom...    28   6.3  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.4  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  212 bits (517), Expect = 3e-55
 Identities = 99/154 (64%), Positives = 119/154 (77%)
 Frame = -2

Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA- 295

Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
           + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355

Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 118
           E+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = -3

Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
           GTI  KV +A    EK IP+++VF +DEMID IGVT+G+
Sbjct: 189 GTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           K KGY+GV +RW   +LPRKTH+G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  212 bits (517), Expect = 3e-55
 Identities = 99/154 (64%), Positives = 119/154 (77%)
 Frame = -2

Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA- 295

Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
           + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355

Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 118
           E+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = -3

Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
           GTI  KV +A    EK IP+++VF +DEMID IGVT+G+
Sbjct: 189 GTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           K KGY+GV +RW   +LPRKTH+G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  210 bits (513), Expect = 8e-55
 Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 1/154 (0%)
 Frame = -2

Query: 579 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQET- 295

Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
           ++A TEYD +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR++L   T R A+
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAM 355

Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 121
           E+I LKFID +S  GHGRFQT  +KA F G T+K
Sbjct: 356 EEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 740 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 624
           G I  KV +A    EK +PVD++F +DEMID IGVT+G+
Sbjct: 189 GDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 631 KXKGYKGVTSRWHTKKLPRKTHQG 560
           K KGY+GV +RW   +LPRKTH+G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = -2

Query: 360 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 190
           I P+   P Y  V  DF + KGC   P+K+   L     SLR H     ++K        
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340

Query: 189 SSKFGHGRFQTPADKAAFMGTLKKD 115
              + +G      DK++  G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 480 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 328
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 663 LGKHRIDRDRFLQMFSGPFHFVLDG 737
           L KH + +D+ L+++ G +H +L+G
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEG 358


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -3

Query: 566 PRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLK 399
           P  LGKL AL+  +L GC  L       V I  +K   + ++LD  + K M KLL+
Sbjct: 782 PEFLGKLKALQELVLSGCSKL---KTFSVPIETMK-CLQILLLDGTALKEMPKLLR 833


>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 532

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +1

Query: 379 ILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPK 558
           ++  CI   +  +LF+DS+   +   + F T        T Y + H   MP   +    K
Sbjct: 151 VVPNCISLPSLKVLFLDSIWFEVPQFLIFLTACPALEDLTIYQKPHSVGMPYHISSKTIK 210

Query: 559 TLGVSY 576
            L V+Y
Sbjct: 211 RLSVTY 216


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 212 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 117
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,796
Number of Sequences: 28952
Number of extensions: 390830
Number of successful extensions: 1026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)