BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_F04 (810 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 3.2 SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.5 SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 7.3 SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.6 SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 9.6 SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.6 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.6 >SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 27.1 bits (57), Expect = 3.2 Identities = 25/115 (21%), Positives = 48/115 (41%) Frame = -1 Query: 408 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 229 A A+ +A A +AEA E+ K+++ EP+++ +K+ + R Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148 Query: 228 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 64 R+ + F+ + R G ++C S V D S+ + LG ++ C Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197 >SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 26.2 bits (55), Expect = 5.5 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Frame = -1 Query: 474 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 295 S+T+ R H L ++ L S G +S +++ GK+ V P + Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326 Query: 294 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 118 DF + +S S+ ++S G R R R +G NS C + V Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379 Query: 117 DDFRSWRGVVLGR 79 + R RG GR Sbjct: 380 SNARKPRGRGRGR 392 >SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 25.8 bits (54), Expect = 7.3 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +2 Query: 71 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 250 D +PS P +SS+ S RH + +L S + D LRD + + RVS+ Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176 >SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pombe|chr 2|||Manual Length = 992 Score = 25.4 bits (53), Expect = 9.6 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = -1 Query: 480 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 331 CD+ + S G L H + R GG + + + N+ SK E +A SG Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652 >SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces pombe|chr 1|||Manual Length = 835 Score = 25.4 bits (53), Expect = 9.6 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 653 PQASYPCW*LFWHLLLKTLYTKGSIGRA 736 P YP + W LL T Y K +IG+A Sbjct: 3 PSIKYPIY--EWELLQDTYYQKSAIGKA 28 >SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces pombe|chr 1|||Manual Length = 312 Score = 25.4 bits (53), Expect = 9.6 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 120 VDDFRSWRGVVLGRAASCCDLLRLS 46 VD FR W + SC DLL+LS Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.4 bits (53), Expect = 9.6 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +3 Query: 672 VGNFSGTSC*KLFILKDR*XVLSQSL 749 V N G S KLFI+KD V+SQ L Sbjct: 3489 VFNIGGRSPQKLFIVKDSGQVMSQDL 3514 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,257,876 Number of Sequences: 5004 Number of extensions: 66631 Number of successful extensions: 157 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 394431430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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