Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_F04
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.6  
At3g53440.2 68416.m05898 expressed protein                             30   2.1  
At3g53440.1 68416.m05897 expressed protein                             30   2.1  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.7  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.8  
At1g64340.1 68414.m07291 hypothetical protein                          29   4.8  
At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to...    28   6.4  
At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to...    28   6.4  
At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to...    28   8.4  
At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to...    28   8.4  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 525 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 349
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 348 SLAESGKD 325
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 110 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 283
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 107 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 286
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 287 LEPPDSRGSTVSIS 328
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 107 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 286
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 287 LEPPDSRGSTVSIS 328
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +2

Query: 44  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 223
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 224 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 343
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 101 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 280
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 281 HCLEPPDSRGSTVS 322
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 745 DCESTXYRSFSIKSF*QEVPEKLPTGITGLWQPSVHS 635
           DCEST Y SF + SF +++   + +    +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


>At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 230

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 645 AFIATLLFDPSMSALPIIAKQNSPSXWIVH 556
           +F   L+     S + I+A++N+PS WI+H
Sbjct: 96  SFFYFLIASILTSLIGIVAEKNNPSIWIIH 125


>At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 269

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 645 AFIATLLFDPSMSALPIIAKQNSPSXWIVH 556
           +F   L+     S + I+A++N+PS WI+H
Sbjct: 135 SFFYFLIASILTSLIGIVAEKNNPSIWIIH 164


>At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575
          Length = 268

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 645 AFIATLLFDPSMSALPIIAKQNSPSXWIVH 556
           +F+ T+      S + ++ ++N+PS WI+H
Sbjct: 133 SFLYTVCVSIVTSTIGLVVEKNNPSVWIIH 162


>At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575
          Length = 360

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 645 AFIATLLFDPSMSALPIIAKQNSPSXWIVH 556
           +F+ T+      S + ++ ++N+PS WI+H
Sbjct: 225 SFLYTVCVSIVTSTIGLVVEKNNPSVWIIH 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,491,029
Number of Sequences: 28952
Number of extensions: 368521
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)