Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_F02
(805 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 30 1.6
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 2.1
At5g03560.1 68418.m00314 expressed protein 29 2.7
At3g53440.2 68416.m05898 expressed protein 29 2.7
At3g53440.1 68416.m05897 expressed protein 29 2.7
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 28 6.3
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 8.3
At1g50630.1 68414.m05690 expressed protein 28 8.3
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 530 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 354
T+V+++ L+ C CD + N +H ++ +K P AGL C +A+
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691
Query: 353 SLAESGKD 330
S GK+
Sbjct: 692 SPDSGGKE 699
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 115 KSSTDYSEPRHRTELYPDLRGRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 288
K S + +PR R LY D + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +1
Query: 85 LPSTTPRQERKSSTDYS---EPRHRTELYPDLRGRDARVKKKTDSIDL 219
L +++ R+E+K++ +S + H +L P+LRGR V+ +TD I++
Sbjct: 64 LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +1
Query: 112 RKSSTDYSEPRHRTELYPDLRGRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 291
RKS+ +P R+ L+ RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 292 LEPPDSRGSTVSIS 333
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +1
Query: 112 RKSSTDYSEPRHRTELYPDLRGRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 291
RKS+ +P R+ L+ RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 292 LEPPDSRGSTVSIS 333
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 49 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRGRDARVKKKTDSIDLRDP 228
G S+ R +H+A + + + ++ +TD + + E + D + + K K +DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVD-KASCTKGKAK------KDP 544
Query: 229 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 348
LRR + +T K L P++ + + S S P A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 106 QERKSSTDYSEPRHRTELYPDLRGRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 285
+E K+S D S+ H E + A KK+ +S+ +D + +S E +++
Sbjct: 95 EEIKASVDESDLTHMREKSAYVSAL-AEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152
Query: 286 HCLEPPDSRGSTVS 327
C E S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166
>At1g50630.1 68414.m05690 expressed protein
Length = 453
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 569 SNAWRILLRNDRKSRHRRIKKQRRYERLGCHKPVIPGGNFSGHLLLKTLYTKGSIGRA 742
S+ IL + R RH RI R + C ++ G FS L+ YT+ +I RA
Sbjct: 234 SDVGSILSEHLRIRRHLRIISHRYRSFILCLLILVTGSQFSSLLITTKAYTEVNIYRA 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,331,250
Number of Sequences: 28952
Number of extensions: 370976
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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