Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E24
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.7  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   8.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 686  PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
            P PPP      P  PP P   P  P P        S P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 710  LSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
            +S P  PP P  +P PP          S P P  P
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 331 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +2

Query: 686 PLPPPXXXLSXPXVPPXPXVL----PXPPXP 766
           P+PPP   +  P  PP P  +    P PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +2

Query: 686 PLPPPXXXLSXPX-VPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
           P+  P    S P  VPP P  +P PP          SRP    P
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,302
Number of Sequences: 5004
Number of extensions: 18009
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)