Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E24
(888 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 35 0.10
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.71
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 30 2.9
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 2.9
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 5.0
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.0
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 5.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 5.0
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 29 5.0
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 6.6
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 28 8.8
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 34.7 bits (76), Expect = 0.10
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = +2
Query: 626 PXPXFXXXXPXXXXXXXXXXPLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
P P P P PPP P PP P P PP P P P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Query: 806 HXPFXXXLWRAAAXPXSLHXAXPL 877
P L R A P L P+
Sbjct: 427 PPPPPPAL-RLACAPPRLRFTSPV 449
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.9 bits (69), Expect = 0.71
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
PPP + P P P P PP P + ++P P P
Sbjct: 66 PPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPP 106
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
P PPP + P PP P P P P + P P
Sbjct: 51 PPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPP 90
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPH-XPF 817
PPP + P PP P LP PP P PH PF
Sbjct: 75 PPPPA--APPAAPPPPPPLPAPPPPPAQPAPQPPPAPPHFLPF 115
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 673 PXXXPSPPARXXXFAPXXATXPXRPPXXXAP 765
P PSPPA P A P PP AP
Sbjct: 51 PPPPPSPPAAAPAAPPPPAAAPAAPPPPAAP 81
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP S P PP P P PP P
Sbjct: 1160 PPPPPPPPPSSPSPPPPPPPPPPPPTP 1186
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/75 (25%), Positives = 23/75 (30%)
Frame = +2
Query: 626 PXPXFXXXXPXXXXXXXXXXPLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
P P + P P PPP P PP P P P P P P
Sbjct: 95 PPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPP--PPNPPYPPPPNAPYPPSPNAPYPPPP 152
Query: 806 HXPFXXXLWRAAAXP 850
+ P+ L+ P
Sbjct: 153 NPPYPPPLYPPPPNP 167
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
PPP P PP P P PP P + P P P
Sbjct: 168 PPPNAPYPPPPYPPPPNP-PYPPPPNPPYPPPPNAPNPPPP 207
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP P PP P P PP P
Sbjct: 468 PPPPPPPPPPPPPPPPPPPPFPPPPPP 494
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP P PP P P PP P
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFPPPP 492
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP P PP P P PP P
Sbjct: 470 PPPPPPPPPPPPPPPPPPFPPPPPPTP 496
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 689 LPPPXXXLSXPXVPPXPXVLPXPPXP 766
+PP L P PP P + P PP P
Sbjct: 296 IPPAPPNLFIPSAPPNPHIPPAPPNP 321
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/63 (26%), Positives = 20/63 (31%)
Frame = +2
Query: 626 PXPXFXXXXPXXXXXXXXXXPLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
P P P P P S P PP P + P PP + + P P
Sbjct: 257 PNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPPAPP----NLFIPSAPPNP 312
Query: 806 HXP 814
H P
Sbjct: 313 HIP 315
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
PLP P + P P P +P PP P
Sbjct: 434 PLPQPPPSIIPPPTTPLPQTVPTPPRP 460
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
PLPPP S P PP P PP P
Sbjct: 931 PLPPPPPGGSAPSQPPPPGGNAPPPPP 957
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP + P PP +P PP P
Sbjct: 308 PAPPPPLNATPPPPPPSRDQVPLPPPP 334
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
PPP + P +PP P ++P P P P P P
Sbjct: 241 PPPPHSMPPPGMPP-PGMMPPPGFPPMGMPGMGGMPPPGMP 280
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXP 766
P PPP + P PP +P PP P
Sbjct: 220 PAPPPPLNATPPPPPPSRDQVPLPPPP 246
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
PPP + P PP P P PP P S P P
Sbjct: 355 PPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPP 395
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXV-LPXPPXP 766
P PPP + P PP P LP PP P
Sbjct: 301 PPPPPPTDFAPPPPPPEPTSELPPPPPP 328
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 686 PLPP-PXXXLSXPXVPPXPXVLPXPPXP 766
PLPP P + P +PP P + PP P
Sbjct: 785 PLPPAPAPFSAAPHLPPAPNISAEPPPP 812
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLP--XPPXPXXSXXXXRSRPXPHXP 814
P PPP S P PP P P PP P S + P P
Sbjct: 205 PPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPP 249
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 698 PXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
P P PP P P PP P S R P P
Sbjct: 198 PSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPP 233
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +2
Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXPFXXXLWRAAAXP 850
P PPP P PP P PP P S + P P +A P
Sbjct: 683 PPPPPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSAGNP 737
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 759 GGXGRTXGXGGTXGXEXXXXGGGRGXXXXXXXXXXGXXXXKXGXG 625
GG G T G GG G GGG G G G G
Sbjct: 64 GGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGGATGGGG 108
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = -1
Query: 813 GXXGXGRXRXXXXDXXGXGGXGRTXGXGGTXGXEXXXXGGGRGXXXXXXXXXXGXXXXKX 634
G G G GG G T G GG G GGG G G
Sbjct: 81 GATGGGGGATGDGGGATGGGGGATGGGGGATGGHGGATGGGVGATGGHGGATGGHGGATG 140
Query: 633 GXG 625
G G
Sbjct: 141 GHG 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,474
Number of Sequences: 59808
Number of extensions: 188113
Number of successful extensions: 987
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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