Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E24
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    35   0.089
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    35   0.089
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    34   0.12 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.9  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.9  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
           PLPPP   LS P   P P   P PP P        + P P  P
Sbjct: 74  PLPPPPLPLSNPPAKPTPP--PPPPKPTIRPPPIPASPPPRPP 114


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXP 814
           PLPPP   LS P   P P   P PP P        + P P  P
Sbjct: 296 PLPPPPLPLSNPPAKPTPP--PPPPKPTIRPPPIPASPPPRPP 336


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
           P PPP      P +PP P + P PP P  S       P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 686 PLPPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXP 805
           P PPP      P +PP P + P PP P  S       P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRPXPHXPFXXXLWRAAAXP 850
           PPP      P  PP P V P PP          ++P P  P     + A A P
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPP--PMFQQGFNAGAPP 757


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 692 PPPXXXLSXPXVPPXPXVLPXPPXP 766
           PPP      P  PP P  +P PP P
Sbjct: 244 PPPSPVCMPPPPPPCPMPIPCPPPP 268


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 765 GXGGXGRTXGXGGTXGXEXXXXGGGRG 685
           G  G GR  G GG+ G      GGGRG
Sbjct: 50  GGTGGGRGGGRGGSGGGRGGGSGGGRG 76


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +2

Query: 695 PPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRS-RPXP 805
           PP      P  PP P + P PP P  S    +S  P P
Sbjct: 57  PPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 695 PPXXXLSXPXVPPXPXVLPXPPXPXXSXXXXRSRP 799
           PP      P  PP P   P PP P  S      RP
Sbjct: 66  PPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,818
Number of Sequences: 27780
Number of extensions: 140365
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)