Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E23
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    97   3e-21
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    93   4e-20
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.44 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    27   2.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.4  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 45/67 (67%), Positives = 51/67 (76%)
 Frame = -1

Query: 558 NIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 379
           NIP IALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ D
Sbjct: 143 NIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPD 202

Query: 378 LFFYRXP 358
           L+FYR P
Sbjct: 203 LYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 43/67 (64%), Positives = 50/67 (74%)
 Frame = -1

Query: 558 NIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 379
           NIP IALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ D
Sbjct: 144 NIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPD 203

Query: 378 LFFYRXP 358
           L+FYR P
Sbjct: 204 LYFYRDP 210


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 353 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 422 VVCFPVTSAGMLWLICSSTVXPEESEKD 339
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 558 NIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439
           ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 202 HVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 555 IPXIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 82  VSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 328 ACCSSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 450
           A   +  LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,955
Number of Sequences: 5004
Number of extensions: 43012
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)