Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E23
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               108   4e-24
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   34   0.15 
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   5.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  108 bits (260), Expect = 4e-24
 Identities = 48/76 (63%), Positives = 57/76 (75%)
 Frame = -1

Query: 585 KPXMEXX*XNIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 406
           +P  E    NIP IA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVLR+RG + R
Sbjct: 132 QPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISR 191

Query: 405 DQRWDVVVDLFFYRXP 358
              W+++ DL+FYR P
Sbjct: 192 ALPWEIMPDLYFYRDP 207



 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -3

Query: 745 PXGKGXXXKXSXXNXGXPXXGRXXXHXSXFTKXXXXXFREPCFLIVLDPAQNHQTI 578
           P G+    K +      P  GR       FT      FREP  LIV DP  +HQ +
Sbjct: 81  PYGQRAILKYASHTGATPIAGRFTP--GTFTNQIQAAFREPRLLIVCDPRIDHQPV 134


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +2

Query: 377  KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 544
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 545  IXGMLXY 565
              G + Y
Sbjct: 1454 ELGTMTY 1460


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 474 HSIGLMWWLLAREVLRLRGVLP 409
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 197  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 96
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 364 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 513
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,671
Number of Sequences: 59808
Number of extensions: 352425
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)