Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E23
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   105   3e-23
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   101   4e-22
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    86   2e-17
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.7  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    28   6.2  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  105 bits (253), Expect = 3e-23
 Identities = 46/76 (60%), Positives = 56/76 (73%)
 Frame = -1

Query: 585 KPXMEXX*XNIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 406
           +P  E    NIP IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 136 QPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAA 195

Query: 405 DQRWDVVVDLFFYRXP 358
            Q+WDV+VDLFFYR P
Sbjct: 196 GQKWDVMVDLFFYREP 211



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
 Frame = -3

Query: 658 FTKXXXXXFREPCFLIVLDPAQNHQTIXGGXIXQHSXDCFVQHRLPTKICGHCYPM---- 491
           FT      F EP  LI+ DP  +HQ I  G +       F     P +      P     
Sbjct: 112 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKG 171

Query: 490 QHQVFPLYWFDVVVV----GT*SAEASW 419
           +H +  L+W    +V    GT +A   W
Sbjct: 172 KHSIGCLFWLLARMVLQMRGTIAAGQKW 199


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  101 bits (243), Expect = 4e-22
 Identities = 45/76 (59%), Positives = 55/76 (72%)
 Frame = -1

Query: 585 KPXMEXX*XNIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 406
           +P  E    NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 405 DQRWDVVVDLFFYRXP 358
            Q+WDV+VDLFFYR P
Sbjct: 197 AQKWDVMVDLFFYREP 212



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 658 FTKXXXXXFREPCFLIVLDPAQNHQTIXGGXI 563
           FT      F EP  LI+ DP  +HQ I  G +
Sbjct: 113 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGAL 144


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = -1

Query: 585 KPXMEXX*XNIPXIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 406
           +P  E    NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 405 DQRWDVVVD 379
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 658 FTKXXXXXFREPCFLIVLDPAQNHQTIXGGXI 563
           FT      F EP  LI+ DP  +HQ I  G +
Sbjct: 113 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGAL 144


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 528 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 391
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 327 PRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 229
           PR+R W QLN K L LS     K   + L+GLK
Sbjct: 59  PRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,439
Number of Sequences: 28952
Number of extensions: 236847
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)