Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E22
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 284 5e-77
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 63 3e-10
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.038
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 1.9
04_01_0376 - 4929447-4929731 29 5.7
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 28 7.6
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 28 7.6
11_04_0354 + 16697571-16700256,16700335-16700759 28 10.0
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 10.0
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 28 10.0
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 284 bits (697), Expect = 5e-77
Identities = 134/197 (68%), Positives = 152/197 (77%)
Frame = -3
Query: 746 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQ 567
GN+IG HRKNHIPRVGDFNES YYMEGNTGHPVF T YGKI VNIC+GRHH LNW+ FG
Sbjct: 215 GNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGL 274
Query: 566 NGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKP 387
NGAEIVFNPSAT+ GE SE MW +EARNAAI N YF +INRVG E FPN FTS DGKP
Sbjct: 275 NGAEIVFNPSATV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP 332
Query: 386 AHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 207
H D G FYGSS+F PD P LSR RDGL+I+ +DLNL RQI+D+ + MT R D Y
Sbjct: 333 QHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTY 392
Query: 206 VNSLSKVLELDYKPQVV 156
+ LS+ L+ D+KPQV+
Sbjct: 393 ASLLSEYLKPDFKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 62.9 bits (146), Expect = 3e-10
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 6/186 (3%)
Frame = -3
Query: 746 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQ 567
G +G +RK+HIP + E Y+ G+TG F T+Y I V IC+ +
Sbjct: 115 GTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVL 174
Query: 566 NGAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTS 402
GAEI+F P+A I E S W + A N A NR+G E E
Sbjct: 175 QGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE--- 230
Query: 401 ADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMT 225
H + + F+G+S+ GP G + + +L+A DL+ + R +
Sbjct: 231 ------HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRD 284
Query: 224 QRLDMY 207
+R D+Y
Sbjct: 285 RRPDLY 290
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 35.9 bits (79), Expect = 0.038
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Frame = -3
Query: 746 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFG 570
G +GKHRK + G + +G+T PV+ T GKI IC+ R +L M+
Sbjct: 150 GKYLGKHRK--VMPTGLERVFWGFGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYA 206
Query: 569 QNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAIN----RVGYEEFPN-EFT 405
+ G +I P+A + W + A+ F + N R Y P F
Sbjct: 207 K-GVQIYCAPTADFSPS------WQASMTHIAVEGGCFVLSANQFCRRKNYPPAPEYTFG 259
Query: 404 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIA 282
D +P+ + + ++ G S P G G + +GLL A
Sbjct: 260 GLDEEPSPESV-IWPGGSSIVSPSGTVLAGPNYEGEGLLTA 299
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -3
Query: 548 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 369
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 368 LFYG 357
YG
Sbjct: 103 KLYG 106
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 623 RSCRIWSRIQDGRCYLPCSSW 685
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 291 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 467
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 570 SEHHPVQDVVPSE-ADVHRDLAVSGREYRMAGVTFHVVV 683
+E HP+ DV+PSE +V D + R MAG H +V
Sbjct: 282 AEVHPIDDVMPSEVVEVKVDDEETNRTDEMAGDGDHAMV 320
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 222 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 338
LG V+ TSVS+LS Q+Q+ +SG G N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 282 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 169
G+G EP+ D ++ L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 27.9 bits (59), Expect = 10.0
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +3
Query: 306 AGQTGAPNAVGAAEVA-----RSVEQAQVFVCRFPVSRSELVRELL------VADSVDGR 452
A + PNA+ AAE+ S+ Q ++ + E + E L +A+ R
Sbjct: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKYLSR 184
Query: 453 CEVAVRDSCVPSF--NVPHVLAAAFSGDRR 536
+++ C P + +PH +A AFSG+RR
Sbjct: 185 SHLSI--DCRPDWMTRIPHYIAVAFSGERR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,268
Number of Sequences: 37544
Number of extensions: 440722
Number of successful extensions: 1348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -