Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E20
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 180 2e-46
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 177 2e-45
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 5e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.58
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 27 4.1
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 180 bits (439), Expect = 2e-46
Identities = 85/126 (67%), Positives = 97/126 (76%)
Frame = -3
Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
+G RAV KFA+HTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VN
Sbjct: 84 YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVN 143
Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
IPVIALC+TDS L VDIAIP N K SIGL+W+LLA EVLR+RG L R WDV+ DL
Sbjct: 144 IPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDL 203
Query: 376 FFYRDP 359
+FYRDP
Sbjct: 204 YFYRDP 209
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 177 bits (430), Expect = 2e-45
Identities = 84/126 (66%), Positives = 96/126 (76%)
Frame = -3
Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
+G RAV KFA+HTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VN
Sbjct: 85 YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVN 144
Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
IPVIALC+TDS L VD+AIP N K SIGL W+LLA EVLRLRG + R W+V+ DL
Sbjct: 145 IPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDL 204
Query: 376 FFYRDP 359
+FYRDP
Sbjct: 205 YFYRDP 210
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 445 A 443
+
Sbjct: 240 S 240
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.58
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 354 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSLANNHHIKPIE 473
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 329 ACCSSFSLSSGVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 451
A + LSS VT Q+ +N P T K K +HF QQ
Sbjct: 28 ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 423 VVCFPVTSAGMLWLICSSTVTPEESEKD 340
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 360 GSR*KNKSTTTSQRWSRGSTPRSLSTSLANNHHIKPI 470
GS + S+ RW STP SL S+ N+ + +
Sbjct: 302 GSDEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAV 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,680
Number of Sequences: 5004
Number of extensions: 56734
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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