SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E20
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   180   2e-46
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   177   2e-45
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   5e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.58 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   1.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   4.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  180 bits (439), Expect = 2e-46
 Identities = 85/126 (67%), Positives = 97/126 (76%)
 Frame = -3

Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
           +G RAV KFA+HTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VN
Sbjct: 84  YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVN 143

Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
           IPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA EVLR+RG L R   WDV+ DL
Sbjct: 144 IPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDL 203

Query: 376 FFYRDP 359
           +FYRDP
Sbjct: 204 YFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  177 bits (430), Expect = 2e-45
 Identities = 84/126 (66%), Positives = 96/126 (76%)
 Frame = -3

Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
           +G RAV KFA+HTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VN
Sbjct: 85  YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVN 144

Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
           IPVIALC+TDS L  VD+AIP N K   SIGL W+LLA EVLRLRG + R   W+V+ DL
Sbjct: 145 IPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDL 204

Query: 376 FFYRDP 359
           +FYRDP
Sbjct: 205 YFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 445 A 443
           +
Sbjct: 240 S 240


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 354 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSLANNHHIKPIE 473
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 329 ACCSSFSLSSGVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 451
           A   +  LSS VT   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 423 VVCFPVTSAGMLWLICSSTVTPEESEKD 340
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 360 GSR*KNKSTTTSQRWSRGSTPRSLSTSLANNHHIKPI 470
           GS  +  S+    RW   STP SL  S+  N+ +  +
Sbjct: 302 GSDEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAV 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,680
Number of Sequences: 5004
Number of extensions: 56734
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -