BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_E20 (795 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 180 2e-46 SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 177 2e-45 SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 5e-04 SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.58 SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 29 1.0 SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3 SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8 SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 27 4.1 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 180 bits (439), Expect = 2e-46 Identities = 85/126 (67%), Positives = 97/126 (76%) Frame = -3 Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557 +G RAV KFA+HTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VN Sbjct: 84 YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVN 143 Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377 IPVIALC+TDS L VDIAIP N K SIGL+W+LLA EVLR+RG L R WDV+ DL Sbjct: 144 IPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDL 203 Query: 376 FFYRDP 359 +FYRDP Sbjct: 204 YFYRDP 209 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 177 bits (430), Expect = 2e-45 Identities = 84/126 (66%), Positives = 96/126 (76%) Frame = -3 Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557 +G RAV KFA+HTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VN Sbjct: 85 YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVN 144 Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377 IPVIALC+TDS L VD+AIP N K SIGL W+LLA EVLRLRG + R W+V+ DL Sbjct: 145 IPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDL 204 Query: 376 FFYRDP 359 +FYRDP Sbjct: 205 YFYRDP 210 >SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 39.5 bits (88), Expect = 5e-04 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -3 Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446 P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239 Query: 445 A 443 + Sbjct: 240 S 240 >SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 194 Score = 29.5 bits (63), Expect = 0.58 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +3 Query: 354 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSLANNHHIKPIE 473 L S+ N+S+T +++ SR ST RS STS AN H K E Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141 >SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 172 Score = 28.7 bits (61), Expect = 1.0 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 329 ACCSSFSLSSGVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 451 A + LSS VT Q+ +N P T K K +HF QQ Sbjct: 28 ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68 >SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 539 Score = 28.3 bits (60), Expect = 1.3 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467 T A + + LC+ +S RF D+A+ NTK +H I Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110 >SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 611 Score = 27.9 bits (59), Expect = 1.8 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 423 VVCFPVTSAGMLWLICSSTVTPEESEKD 340 V+ FP TS+G LI S + PEE KD Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598 >SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 26.6 bits (56), Expect = 4.1 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +3 Query: 360 GSR*KNKSTTTSQRWSRGSTPRSLSTSLANNHHIKPI 470 GS + S+ RW STP SL S+ N+ + + Sbjct: 302 GSDEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAV 338 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,892,680 Number of Sequences: 5004 Number of extensions: 56734 Number of successful extensions: 158 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 158 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 387388442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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