Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E20
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   177   1e-44
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   177   1e-44
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877...    29   5.6  
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198...    29   5.6  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    28   7.4  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   9.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  177 bits (430), Expect = 1e-44
 Identities = 79/126 (62%), Positives = 96/126 (76%)
 Frame = -3

Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
           +GQRAV KFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  N
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGN 145

Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
           IP IA C+TDSP+R+VDI IP N K   SIG ++WLLA  VL++RG +    +WDV+VDL
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDL 205

Query: 376 FFYRDP 359
           FFYRDP
Sbjct: 206 FFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  177 bits (430), Expect = 1e-44
 Identities = 79/126 (62%), Positives = 97/126 (76%)
 Frame = -3

Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
           +GQRAV KFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  N
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGN 145

Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
           IP IA C+TDSP+R+VDI IP N K  +SIG ++WLLA  VL++RG +    +WDV+VDL
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDL 205

Query: 376 FFYRDP 359
           FFYRDP
Sbjct: 206 FFYRDP 211


>05_03_0130 -
           8770354-8770678,8770799-8770992,8771091-8771203,
           8771320-8771482
          Length = 264

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 507 TLLSHATPSLPTLLV*CGGCWQVKC*GFVVCF--PVT 403
           ++++  +PS+    + CG C+QVKC G   C   PVT
Sbjct: 71  SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107


>04_04_0730 +
           27618981-27619143,27619237-27619349,27619695-27619888,
           27620141-27620465
          Length = 264

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 507 TLLSHATPSLPTLLV*CGGCWQVKC*GFVVCF--PVT 403
           ++++  +PS+    + CG C+QVKC G   C   PVT
Sbjct: 71  SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 733 GQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYV 560
           G+ +      HT +T    R TP AF +   AA  E R+ +  +   ++      EA Y 
Sbjct: 260 GENSCWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYR 319

Query: 559 NIPVIALCNTDSPLR 515
           +I V  + + + P++
Sbjct: 320 HIEVFDMRSPEQPMQ 334


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 478
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,704,053
Number of Sequences: 37544
Number of extensions: 402457
Number of successful extensions: 1154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)